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PLOS Computational Biology / Public Library of Science

Citation Profile [Updated: 2024-03-05 07:42:34]
5 Years H Index
20
Impact Factor (IF)
0.14
5 Years IF
0.14
Data available in this report

[Raw data] [50 most cited papers] [50 most relevant papers] [cites used to compute IF] [Recent citations ][Frequent citing series ] [more data in EconPapers] [trace new citations] [Missing citations? Add them now] [Incorrect content? Let us know]

Main indicators
Raw Data

 

IF AIF CIF IF5 DOC CDO CIT NCI CCU D2Y C2Y D5Y C5Y SC %SC CiY II AII
2005 0 0.51 0 0 13 13 36 0 0 0 0 0 0.23
2006 0.38 0.5 0.14 0.38 38 51 179 7 7 13 5 13 5 7 100 2 0.05 0.22
2007 0.25 0.46 0.23 0.25 64 115 194 26 33 51 13 51 13 23 88.5 3 0.05 0.2
2008 0.23 0.49 0.14 0.21 90 205 215 29 62 102 23 115 24 18 62.1 2 0.02 0.23
2009 0.16 0.48 0.13 0.15 102 307 286 41 103 154 24 205 31 28 68.3 3 0.03 0.24
2010 0.2 0.48 0.16 0.17 119 426 447 69 172 192 38 307 53 43 62.3 3 0.03 0.21
2011 0.2 0.52 0.19 0.2 128 554 354 106 278 221 45 413 83 44 41.5 7 0.05 0.24
2012 0.25 0.52 0.23 0.23 142 696 232 163 441 247 62 503 117 65 39.9 8 0.06 0.22
2013 0.21 0.56 0.25 0.25 161 857 302 216 657 270 56 581 147 89 41.2 7 0.04 0.24
2014 0.14 0.55 0.2 0.19 196 1053 357 209 866 303 42 652 123 116 55.5 6 0.03 0.23
2015 0.17 0.55 0.19 0.17 208 1261 406 242 1108 357 60 746 127 134 55.4 6 0.03 0.23
2016 0.16 0.53 0.17 0.14 187 1448 265 247 1355 404 63 835 113 146 59.1 10 0.05 0.21
2017 0.17 0.55 0.19 0.16 213 1661 259 316 1671 395 68 894 142 192 60.8 7 0.03 0.21
2018 0.13 0.56 0.15 0.14 182 1843 181 275 1946 400 53 965 136 116 42.2 4 0.02 0.24
2019 0.17 0.58 0.19 0.17 240 2083 145 390 2336 395 69 986 164 231 59.2 7 0.03 0.23
2020 0.13 0.7 0.18 0.16 285 2368 164 434 2770 422 53 1030 161 195 44.9 19 0.07 0.33
2021 0.14 0.84 0.16 0.15 342 2710 116 442 3212 525 75 1107 171 100 22.6 15 0.04 0.31
2022 0.15 0.93 0.2 0.17 78 2788 6 563 3775 627 92 1262 216 11 2 3 0.04 0.28
IF: Two years Impact Factor: C2Y / D2Y
AIF: Average Impact Factor for all series in RePEc in year y
CIF: Cumulative impact factor
IF5: Five years Impact Factor: C5Y / D5Y
DOC: Number of documents published in year y
CDO: Cumulative number of documents published until year y
CIT: Number of citations to papers published in year y
NCI: Number of citations in year y
CCU: Cumulative number of citations to papers published until year y
D2Y: Number of articles published in y-1 plus y-2
C2Y: Cites in y to articles published in y-1 plus y-2
D5Y: Number of articles published in y-1 until y-5
C5Y: Cites in y to articles published in y-1 until y-5
SC: selft citations in y to articles published in y-1 plus y-2
%SC: Percentage of selft citations in y to articles published in y-1 plus y-2
CiY: Cites in year y to documents published in year y
II: Immediacy Index: CiY / Documents.
AII: Average Immediacy Index for series in RePEc in year y
50 most cited documents in this series
#YearTitleCited
12010Evolutionary Establishment of Moral and Double Moral Standards through Spatial Interactions. (2010). Szabo, Gyorgy ; Perc, Matja ; Szolnoki, Attila ; Helbing, Dirk. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000758.

Full description at Econpapers || Download paper

80
22006Cooperation Prevails When Individuals Adjust Their Social Ties. (2006). Lenaerts, Tom ; Pacheco, Jorge M ; Santos, Francisco C. In: PLOS Computational Biology. RePEc:plo:pcbi00:0020140.

Full description at Econpapers || Download paper

78
32013Software for Computing and Annotating Genomic Ranges. (2013). Carey, Vincent J ; Morgan, Martin T ; Gentleman, Robert ; Carlson, Marc ; Aboyoun, Patrick ; Pages, Herve ; Huber, Wolfgang ; Lawrence, Michael. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003118.

Full description at Econpapers || Download paper

53
42010Game Theory of Social Distancing in Response to an Epidemic. (2010). Reluga, Timothy C. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000793.

Full description at Econpapers || Download paper

51
52010Dynamics and Control of Diseases in Networks with Community Structure. (2010). Jones, James H ; Salathe, Marcel. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000736.

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47
62018Punishment and inspection for governing the commons in a feedback-evolving game. (2018). Szolnoki, Attila ; Chen, Xiaojie. In: PLOS Computational Biology. RePEc:plo:pcbi00:1006347.

Full description at Econpapers || Download paper

42
72007Universally Sloppy Parameter Sensitivities in Systems Biology Models. (2007). Sethna, James P ; Myers, Christopher R ; Brown, Kevin S ; Casey, Fergal P ; Waterfall, Joshua J ; Gutenkunst, Ryan N. In: PLOS Computational Biology. RePEc:plo:pcbi00:0030189.

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39
82015MAGMA: Generalized Gene-Set Analysis of GWAS Data. (2015). Posthuma, Danielle ; Heskes, Tom ; Mooij, Joris M ; de Leeuw, Christiaan A. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004219.

Full description at Econpapers || Download paper

38
92012Evolutionary Game Theory and Social Learning Can Determine How Vaccine Scares Unfold. (2012). Bhattacharyya, Samit ; Bauch, Chris T. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002452.

Full description at Econpapers || Download paper

32
102017OpenMM 7: Rapid development of high performance algorithms for molecular dynamics. (2017). Harrigan, Matthew P ; Simmonett, Andrew C ; Wang, Lee-Ping ; Beauchamp, Kyle A ; Zhao, Yutong ; McGibbon, Robert T ; Chodera, John D ; Pande, Vijay S ; Swails, Jason ; Brooks, Bernard R ; Eastman, Peter ; Wiewiora, Rafal P ; Stern, Chaya D. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005659.

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27
112015Sparse and Compositionally Robust Inference of Microbial Ecological Networks. (2015). Bonneau, Richard A ; Blaser, Martin J ; Littman, Dan R ; Miraldi, Emily R ; Muller, Christian L ; Kurtz, Zachary D. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004226.

Full description at Econpapers || Download paper

25
122014Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible. (2014). Holmes, Susan ; McMurdie, Paul J. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003531.

Full description at Econpapers || Download paper

25
132013Approximate Bayesian Computation. (2013). Dessimoz, Christophe ; Foll, Matthieu ; Corander, Jukka ; Numminen, Elina ; Busetto, Alberto Giovanni ; Sunnker, Mikael. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002803.

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25
142011Accelerated Profile HMM Searches. (2011). Eddy, Sean R. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002195.

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23
152011Mitigation Strategies for Pandemic Influenza A: Balancing Conflicting Policy Objectives. (2011). Anderson, Roy M ; Heesterbeek, Hans ; Klinkenberg, Don ; Hollingsworth, Deirdre T. In: PLOS Computational Biology. RePEc:plo:pcbi00:1001076.

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23
162009Semantic Similarity in Biomedical Ontologies. (2009). Couto, Francisco M ; Lord, Phillip ; Falco, Andre O ; Faria, Daniel ; Pesquita, Catia. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000443.

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22
172020Practical considerations for measuring the effective reproductive number, Rt. (2020). Bonhoeffer, Sebastian ; Hay, James A ; Scire, Jeremie ; Niehus, Rene ; Huisman, Jana S ; Kahn, Rebecca ; White, Laura F ; Tedijanto, Christine ; Thompson, Robin N ; Joshi, Keya ; Sherrat, Katharine ; Abbott, Sam ; Cobey, Sarah ; Bosse, Nikos I ; Baskerville, Edward B ; Lipsitch, Marc ; Munday, James D ; McGough, Lauren ; Funk, Sebastian ; Meakin, Sophie ; Gostic, Katelyn M ; Wallinga, Jacco ; Hellewell, Joel ; Stadler, Tanja ; de Salazar, Pablo M. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008409.

Full description at Econpapers || Download VBA: A Probabilistic Treatment of Nonlinear Models for Neurobiological and Behavioural Data. (2014). Rigoux, Lionel ; Adam, Vincent ; Daunizeau, Jean. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003441.

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21
192009Broadband Criticality of Human Brain Network Synchronization. (2009). Bullmore, ED ; Christensen, Soren R ; Smith, Marie L ; Kitzbichler, Manfred G. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000314.

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21
202009Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples. (2009). Pop, Mihai ; Nagarajan, Niranjan ; White, James Robert. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000352.

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20
212011How Structure Determines Correlations in Neuronal Networks. (2011). Rotter, Stefan ; Cardanobile, Stefano ; Staude, Benjamin ; Pernice, Volker. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002059.

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19
222014Evolutionary Game Dynamics in Populations with Heterogenous Structures. (2014). Hauert, Christoph ; Fu, Feng ; Maciejewski, Wes. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003567.

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19
232010Associating Genes and Protein Complexes with Disease via Network Propagation. (2010). Sharan, Roded ; Shlomi, Tomer ; Ruppin, Eytan ; Magger, Oded ; Vanunu, Oron. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000641.

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18
242007Machine Learning and Its Applications to Biology. (2007). Drghici, Sorin ; Romero, Roberto ; Chen, Xue-Wen ; Carey, Vincent J ; Tarca, Adi L. In: PLOS Computational Biology. RePEc:plo:pcbi00:0030116.

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17
252009Population Structure Induces a Symmetry Breaking Favoring the Emergence of Cooperation. (2009). Pinheiro, Flávio ; Santos, Francisco C ; Pacheco, Jorge M. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000596.

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17
262010Comparing Families of Dynamic Causal Models. (2010). Leff, Alex P ; Schofield, Thomas M ; Friston, Karl J ; Rosa, Maria J ; Daunizeau, Jean ; Stephan, Klaas E ; Penny, Will D. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000709.

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17
272014Comparison of Filtering Methods for the Modeling and Retrospective Forecasting of Influenza Epidemics. (2014). Shaman, Jeffrey ; Karspeck, Alicia ; Yang, Wan. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003583.

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16
282008Support Vector Machines and Kernels for Computational Biology. (2008). Ratsch, Gunnar ; Scholkopf, Bernhard ; Sonnenburg, Soren ; Ong, Cheng Soon ; Ben-Hur, Asa. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000173.

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16
292011Risk, Unexpected Uncertainty, and Estimation Uncertainty: Bayesian Learning in Unstable Settings. (2011). Bossaerts, Peter ; Payzan-Lenestour, Elise. In: PLOS Computational Biology. RePEc:plo:pcbi00:1001048.

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16
302006Nonoptimal Component Placement, but Short Processing Paths, due to Long-Distance Projections in Neural Systems. (2006). Hilgetag, Claus C ; Kaiser, Marcus . In: PLOS Computational Biology. RePEc:plo:pcbi00:0020095.

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16
312016Efficient Coalescent Simulation and Genealogical Analysis for Large Sample Sizes. (2016). McVean, Gilean ; Etheridge, Alison M ; Kelleher, Jerome. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004842.

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16
322014On the Origins of Suboptimality in Human Probabilistic Inference. (2014). Wolpert, Daniel M ; Vijayakumar, Sethu ; Acerbi, Luigi. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003661.

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16
332014A Toolbox for Representational Similarity Analysis. (2014). Kriegeskorte, Nikolaus ; Marslen-Wilson, William ; Su, LI ; Walther, Alexander ; Wingfield, Cai ; Nili, Hamed. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003553.

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15
342010Parameter Estimation and Model Selection in Computational Biology. (2010). Khammash, Mustafa ; Lillacci, Gabriele. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000696.

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15
352020Estimation of country-level basic reproductive ratios for novel Coronavirus (SARS-CoV-2/COVID-19) using synthetic contact matrices. (2020). Keeling, Matt J ; Hilton, Joe. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008031.

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14
362010Probability Matching as a Computational Strategy Used in Perception. (2010). Shams, Ladan ; Beierholm, Ulrik R ; Wozny, David R. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000871.

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14
372015Emergence of Shared Intentionality Is Coupled to the Advance of Cumulative Culture. (2015). Newton, Jonathan ; Angus, Simon. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004587.

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14
382015Flexible Modeling of Epidemics with an Empirical Bayes Framework. (2015). Rosenfeld, Roni ; Tibshirani, Ryan J ; Hyun, Sangwon ; Farrow, David C ; Brooks, Logan C. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004382.

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14
392008Hierarchical Models in the Brain. (2008). Friston, Karl. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000211.

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14
402005Ten Simple Rules for Getting Published. (2005). Bourne, Philip E. In: PLOS Computational Biology. RePEc:plo:pcbi00:0010057.

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14
412016MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data. (2016). Tappu, Rewati ; Ruscheweyh, Hans-Joachim ; Mitra, Suparna ; El-Hadidi, Mohamed ; Gorska, Anna ; Flade, Isabell ; Beier, Sina ; Huson, Daniel H. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004957.

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13
422011Simulated Epidemics in an Empirical Spatiotemporal Network of 50,185 Sexual Contacts. (2011). Rocha, Luis ; Holme, Petter ; Liljeros, Fredrik ; Luis , . In: PLOS Computational Biology. RePEc:plo:pcbi00:1001109.

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13
432017Fast online deconvolution of calcium imaging data. (2017). Paninski, Liam ; Zhou, Pengcheng ; Friedrich, Johannes. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005423.

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13
442016Reinforcement Learning Explains Conditional Cooperation and Its Moody Cousin. (2016). Masuda, Naoki ; Takezawa, Masanori ; Horita, Yutaka ; Ezaki, Takahiro. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005034.

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13
452015The Sense of Confidence during Probabilistic Learning: A Normative Account. (2015). Dehaene, Stanislas ; Schlunegger, Daniel ; Meyniel, Florent. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004305.

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13
462009Pairwise Maximum Entropy Models for Studying Large Biological Systems: When They Can Work and When They Cant. (2009). Latham, Peter E ; Nirenberg, Sheila ; Roudi, Yasser. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000380.

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13
472021Multivariable association discovery in population-scale meta-omics studies. (2021). Huttenhower, Curtis ; Ren, Boyu ; Bravo, Hector Corrada ; Weingart, George ; Franzosa, Eric A ; Tickle, Timothy L ; Paulson, Joseph N ; Nguyen, Long H ; Waldron, Levi ; Zhang, Yancong ; Lu, Yiren ; Ma, Siyuan ; Subramanian, Ayshwarya ; McIver, Lauren J ; Wilkinson, Jeremy E ; Rahnavard, Ali ; Thompson, Kelsey N ; Mallick, Himel ; Chatterjee, Suvo ; Schwager, Emma H. In: PLOS Computational Biology. RePEc:plo:pcbi00:1009442.

Full description at Econpapers || Download The Effect of Incentives and Meta-incentives on the Evolution of Cooperation. (2015). Sasaki, Tatsuya ; Toriumi, Fujio ; Yamamoto, Hitoshi ; Okada, Isamu. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004232.

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13
492018Prediction of infectious disease epidemics via weighted density ensembles. (2018). Reich, Nicholas G ; Ray, Evan L. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005910.

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12
502011Neural Dynamics as Sampling: A Model for Stochastic Computation in Recurrent Networks of Spiking Neurons. (2011). Maass, Wolfgang ; Nessler, Bernhard ; Bill, Johannes ; Buesing, Lars. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002211.

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12
50 most relevant documents in this series (papers most cited in the last two years)
#YearTitleCited
12013Software for Computing and Annotating Genomic Ranges. (2013). Carey, Vincent J ; Morgan, Martin T ; Gentleman, Robert ; Carlson, Marc ; Aboyoun, Patrick ; Pages, Herve ; Huber, Wolfgang ; Lawrence, Michael. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003118.

Full description at Econpapers || Download paper

48
22015MAGMA: Generalized Gene-Set Analysis of GWAS Data. (2015). Posthuma, Danielle ; Heskes, Tom ; Mooij, Joris M ; de Leeuw, Christiaan A. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004219.

Full description at Econpapers || Download paper

30
32017OpenMM 7: Rapid development of high performance algorithms for molecular dynamics. (2017). Harrigan, Matthew P ; Simmonett, Andrew C ; Wang, Lee-Ping ; Beauchamp, Kyle A ; Zhao, Yutong ; McGibbon, Robert T ; Chodera, John D ; Pande, Vijay S ; Swails, Jason ; Brooks, Bernard R ; Eastman, Peter ; Wiewiora, Rafal P ; Stern, Chaya D. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005659.

Full description at Econpapers || Download paper

26
42010Evolutionary Establishment of Moral and Double Moral Standards through Spatial Interactions. (2010). Szabo, Gyorgy ; Perc, Matja ; Szolnoki, Attila ; Helbing, Dirk. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000758.

Full description at Econpapers || Download paper

26
52018Punishment and inspection for governing the commons in a feedback-evolving game. (2018). Szolnoki, Attila ; Chen, Xiaojie. In: PLOS Computational Biology. RePEc:plo:pcbi00:1006347.

Full description at Econpapers || Download paper

21
62010Game Theory of Social Distancing in Response to an Epidemic. (2010). Reluga, Timothy C. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000793.

Full description at Econpapers || Download paper

18
72020Practical considerations for measuring the effective reproductive number, Rt. (2020). Bonhoeffer, Sebastian ; Hay, James A ; Scire, Jeremie ; Niehus, Rene ; Huisman, Jana S ; Kahn, Rebecca ; White, Laura F ; Tedijanto, Christine ; Thompson, Robin N ; Joshi, Keya ; Sherrat, Katharine ; Abbott, Sam ; Cobey, Sarah ; Bosse, Nikos I ; Baskerville, Edward B ; Lipsitch, Marc ; Munday, James D ; McGough, Lauren ; Funk, Sebastian ; Meakin, Sophie ; Gostic, Katelyn M ; Wallinga, Jacco ; Hellewell, Joel ; Stadler, Tanja ; de Salazar, Pablo M. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008409.

Full description at Econpapers || Download Evolutionary Game Theory and Social Learning Can Determine How Vaccine Scares Unfold. (2012). Bhattacharyya, Samit ; Bauch, Chris T. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002452.

Full description at Econpapers || Download paper

14
92021Multivariable association discovery in population-scale meta-omics studies. (2021). Huttenhower, Curtis ; Ren, Boyu ; Bravo, Hector Corrada ; Weingart, George ; Franzosa, Eric A ; Tickle, Timothy L ; Paulson, Joseph N ; Nguyen, Long H ; Waldron, Levi ; Zhang, Yancong ; Lu, Yiren ; Ma, Siyuan ; Subramanian, Ayshwarya ; McIver, Lauren J ; Wilkinson, Jeremy E ; Rahnavard, Ali ; Thompson, Kelsey N ; Mallick, Himel ; Chatterjee, Suvo ; Schwager, Emma H. In: PLOS Computational Biology. RePEc:plo:pcbi00:1009442.

Full description at Econpapers || Download Sparse and Compositionally Robust Inference of Microbial Ecological Networks. (2015). Bonneau, Richard A ; Blaser, Martin J ; Littman, Dan R ; Miraldi, Emily R ; Muller, Christian L ; Kurtz, Zachary D. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004226.

Full description at Econpapers || Download paper

12
112016Efficient Coalescent Simulation and Genealogical Analysis for Large Sample Sizes. (2016). McVean, Gilean ; Etheridge, Alison M ; Kelleher, Jerome. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004842.

Full description at Econpapers || Download paper

11
122006Cooperation Prevails When Individuals Adjust Their Social Ties. (2006). Lenaerts, Tom ; Pacheco, Jorge M ; Santos, Francisco C. In: PLOS Computational Biology. RePEc:plo:pcbi00:0020140.

Full description at Econpapers || Download paper

11
132017Fast online deconvolution of calcium imaging data. (2017). Paninski, Liam ; Zhou, Pengcheng ; Friedrich, Johannes. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005423.

Full description at Econpapers || Download paper

9
142014Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible. (2014). Holmes, Susan ; McMurdie, Paul J. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003531.

Full description at Econpapers || Download paper

9
152016MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data. (2016). Tappu, Rewati ; Ruscheweyh, Hans-Joachim ; Mitra, Suparna ; El-Hadidi, Mohamed ; Gorska, Anna ; Flade, Isabell ; Beier, Sina ; Huson, Daniel H. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004957.

Full description at Econpapers || Download paper

9
162021Evaluating epidemic forecasts in an interval format. (2021). Reich, Nicholas G ; Gneiting, Tilmann ; Ray, Evan L ; Bracher, Johannes. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008618.

Full description at Econpapers || Download paper

9
172016Reinforcement Learning Explains Conditional Cooperation and Its Moody Cousin. (2016). Masuda, Naoki ; Takezawa, Masanori ; Horita, Yutaka ; Ezaki, Takahiro. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005034.

Full description at Econpapers || Download paper

9
182013Approximate Bayesian Computation. (2013). Dessimoz, Christophe ; Foll, Matthieu ; Corander, Jukka ; Numminen, Elina ; Busetto, Alberto Giovanni ; Sunnker, Mikael. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002803.

Full description at Econpapers || Download paper

8
192015VDJtools: Unifying Post-analysis of T Cell Receptor Repertoires. (2015). Zvyagin, Ivan V ; Nazarov, Vadim I ; Pogorelyy, Mikhail V ; Putintseva, Ekaterina V ; Britanova, Olga V ; Bolotin, Dmitriy A ; Turchaninova, Maria A ; Chudakov, Dmitriy M ; Bagaev, Dmitriy V ; Skorobogatova, Elena V ; Shugay, Mikhail ; Kirgizov, Kirill I ; Kirgizova, Vitalina I. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004503.

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8
202009Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples. (2009). Pop, Mihai ; Nagarajan, Niranjan ; White, James Robert. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000352.

Full description at Econpapers || Download paper

7
212016Cytofkit: A Bioconductor Package for an Integrated Mass Cytometry Data Analysis Pipeline. (2016). Chan-Lau, Jorge ; Chen, Jin Miao ; Poidinger, Michael ; Newell, Evan W ; Wong, Michael Thomas. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005112.

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7
222015Asymmetric Evolutionary Games. (2015). Hauert, Christoph ; McAvoy, Alex. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004349.

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6
232021Spec2Vec: Improved mass spectral similarity scoring through learning of structural relationships. (2021). , Justin ; Rogers, Simon ; Diblen, Faruk ; Spaaks, Jurriaan H ; Verhoeven, Stefan ; Ridder, Lars ; Huber, Florian. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008724.

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6
242021MAUI (MBI Analysis User Interface)—An image processing pipeline for Multiplexed Mass Based Imaging. (2021). Keren, Leeat ; Angelo, Michael ; Mrdjen, Dunja ; Oliveria, John-Paul ; Greenbaum, Shirley ; Milo, Idan ; Baranski, Alex. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008887.

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6
252014VBA: A Probabilistic Treatment of Nonlinear Models for Neurobiological and Behavioural Data. (2014). Rigoux, Lionel ; Adam, Vincent ; Daunizeau, Jean. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003441.

Full description at Econpapers || Download paper

6
262020Systems biology informed deep learning for inferring parameters and hidden dynamics. (2020). Em, George ; Raissi, Maziar ; Lu, LU ; Yazdani, Alireza . In: PLOS Computational Biology. RePEc:plo:pcbi00:1007575.

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5
272017mixOmics: An R package for ‘omics feature selection and multiple data integration. (2017). le Cao, Kim-Anh ; Singh, Amrit ; Gautier, Benoit ; Rohart, Florian . In: PLOS Computational Biology. RePEc:plo:pcbi00:1005752.

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5
282019Evolutionary multiplayer games on graphs with edge diversity. (2019). Wang, Long ; Zhou, Lei ; Su, QI. In: PLOS Computational Biology. RePEc:plo:pcbi00:1006947.

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292011Simulated Epidemics in an Empirical Spatiotemporal Network of 50,185 Sexual Contacts. (2011). Rocha, Luis ; Holme, Petter ; Liljeros, Fredrik ; Luis , . In: PLOS Computational Biology. RePEc:plo:pcbi00:1001109.

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302010A Bayesian Framework to Account for Complex Non-Genetic Factors in Gene Expression Levels Greatly Increases Power in eQTL Studies. (2010). Winn, John ; Durbin, Richard ; Parts, Leopold ; Stegle, Oliver. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000770.

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312018Astrocytic Kir4.1 channels and gap junctions account for spontaneous epileptic seizure. (2018). Wu, Ying ; Yu, Yuguo ; Chen, Liang ; Li, Jiajia ; Du, Mengmeng. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005877.

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322017Mindboggling morphometry of human brains. (2017). Reuter, Martin ; Rossa, Brian ; Lee, Noah ; Stavsky, Eliezer ; Hame, Yrjo ; Giard, Joachim ; Bao, Forrest S ; Ghosh, Satrajit S ; Klein, Arno ; Keshavan, Anisha ; Neto, Elias Chaibub. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005350.

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332019Accuracy of real-time multi-model ensemble forecasts for seasonal influenza in the U.S.. (2019). Crawford-Crudell, Willow ; Brooks, Logan C ; Kandula, Sasikiran ; Osthus, Dave ; Shaman, Jeffrey ; Ray, Evan L ; Rosenfeld, Roni ; Tushar, Abhinav ; Johansson, Michael A ; Yamana, Teresa K ; Biggerstaff, Matthew ; McGowan, Craig J ; Silva, Rebecca ; Reich, Nicholas G ; Moore, Evan ; Gibson, Graham Casey. In: PLOS Computational Biology. RePEc:plo:pcbi00:1007486.

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342018Prediction of antibiotic resistance in Escherichia coli from large-scale pan-genome data. (2018). Parts, Leopold ; Warringer, Jonas ; Mustonen, Ville ; Farewell, Anne ; Palm, Martin ; Moradigaravand, Danesh. In: PLOS Computational Biology. RePEc:plo:pcbi00:1006258.

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352020Biologically-informed neural networks guide mechanistic modeling from sparse experimental data. (2020). Flores, Kevin B ; Simpson, Matthew J ; Baker, Ruth E ; Nardini, John T ; Lagergren, John H. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008462.

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362013Practical Guidelines for the Comprehensive Analysis of ChIP-seq Data. (2013). Zhang, Jie ; Taslim, Cenny ; Madrigal, Pedro ; Liu, Tao ; Lefebvre, Celine ; Ladunga, Istvan ; Krajewski, Pawel ; Bailey, Timothy. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003326.

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372011Mitigation Strategies for Pandemic Influenza A: Balancing Conflicting Policy Objectives. (2011). Anderson, Roy M ; Heesterbeek, Hans ; Klinkenberg, Don ; Hollingsworth, Deirdre T. In: PLOS Computational Biology. RePEc:plo:pcbi00:1001076.

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382017Predicting the pathogenicity of novel variants in mitochondrial tRNA with MitoTIP. (2017). Sondheimer, Neal ; Wallace, Douglas C ; Procaccio, Vincent ; Zhang, Shiping ; Lott, Marie T ; Leipzig, Jeremy ; Sonney, Sanjay. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005867.

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392017Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model. (2017). Xu, Jinbo ; Zhang, Renyu ; Li, Zhen ; Sun, Siqi ; Wang, Sheng. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005324.

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402015Resting-State Temporal Synchronization Networks Emerge from Connectivity Topology and Heterogeneity. (2015). Corbetta, Maurizio ; Mantini, Dante ; Romani, Gian Luca ; Hagmann, Patric ; Deco, Gustavo ; Ponce-Alvarez, Adrian. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004100.

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412012Automated Tracking of Whiskers in Videos of Head Fixed Rodents. (2012). Myers, Eugene W ; Svoboda, Karel ; Peron, Simon ; Hires, Andrew ; Petreanu, Leopoldo ; Huber, Daniel ; O'Connor, Daniel H ; Clack, Nathan G. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002591.

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422021Optimal timing of one-shot interventions for epidemic control. (2021). Miller, Joel C ; Kiss, Istvan Z ; di Lauro, Francesco. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008763.

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432017Leveraging functional annotations in genetic risk prediction for human complex diseases. (2017). Zhao, Hongyu ; Xu, Xinran ; Fang, Fang ; Yang, Can ; Yao, Xinwei ; Powles, Ryan ; Lu, Qiongshi ; Hu, Yiming. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005589.

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442017A machine learning approach for predicting CRISPR-Cas9 cleavage efficiencies and patterns underlying its mechanism of action. (2017). Mayrose, Itay ; Amar, David ; Yan, Winston X ; Abadi, Shiran. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005807.

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452017ROTS: An R package for reproducibility-optimized statistical testing. (2017). Elo, Laura L ; Faux, Thomas ; Jaakkola, Maria K ; Seyednasrollah, Fatemeh ; Suomi, Tomi. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005562.

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462011Is My Network Module Preserved and Reproducible?. (2011). Horvath, Steve ; Oldham, Michael C ; Luo, Rui ; Langfelder, Peter. In: PLOS Computational Biology. RePEc:plo:pcbi00:1001057.

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472018Detection and analysis of spatiotemporal patterns in brain activity. (2018). Gong, Pulin ; Townsend, Rory G. In: PLOS Computational Biology. RePEc:plo:pcbi00:1006643.

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482014Classical Mathematical Models for Description and Prediction of Experimental Tumor Growth. (2014). Hahnfeldt, Philip ; Hlatky, Lynn ; John , ; Tracz, Amanda ; Beheshti, Afshin ; Lamont, Clare ; Benzekry, Sebastien. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003800.

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492016Forecasting Human African Trypanosomiasis Prevalences from Population Screening Data Using Continuous Time Models. (2016). van De, Joris ; de Vlas, Sake J ; Lutumba, Pascal ; Lumbala, Crispin ; Hasker, Epco ; de Vries, Harwin. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005103.

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502011How Structure Determines Correlations in Neuronal Networks. (2011). Rotter, Stefan ; Cardanobile, Stefano ; Staude, Benjamin ; Pernice, Volker. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002059.

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Citing documents used to compute impact factor: 60
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2023
2023Intracellular tension sensor reveals mechanical anisotropy of the actin cytoskeleton. (2023). Murrell, Michael ; Calderwood, David A ; Schwartz, Martin A ; Huet-Calderwood, Clotilde ; Shang, Xingbo ; Muresan, Camelia ; Amiri, Sorosh. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-43612-5.

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2023.

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2023Where Do Mistakes Lead? A Survey of Games with Incompetent Players. (2023). Filar, Jerzy A ; Kleshnina, Maria ; Graham, Thomas. In: Dynamic Games and Applications. RePEc:spr:dyngam:v:13:y:2023:i:1:d:10.1007_s13235-022-00425-3.

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2023Action initiation and punishment learning differ from childhood to adolescence while reward learning remains stable. (2023). Dochnal, Roberta ; Lockwood, Patricia L ; Dikeos, Dimitris ; Brito, Stephane A ; Rogers, Jack C ; Freitag, Christine M ; Klein-Flugge, Miriam C ; Stadler, Christina ; Kohls, Gregor ; Popma, Arne ; Brazil, Inti A ; Konrad, Kerstin ; Pauli, Ruth ; Hervas, Amaia ; Herpertz-Dahlmann, Beate ; Fernandez-Rivas, Aranzazu ; Fairchild, Graeme. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-41124-w.

Full description at Econpapers || Download Growth phase estimation for abundant bacterial populations sampled longitudinally from human stool metagenomes. (2023). Gibbons, Sean M ; Baliga, Nitin S ; Valenzuela, Jacob J ; Wilson, James ; Diener, Christian ; Lim, Joe J. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-41424-1.

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2023.

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2023Brain-optimized deep neural network models of human visual areas learn non-hierarchical representations. (2023). Naselaris, Thomas ; Kay, Kendrick ; Wu, Yihan ; Allen, Emily J ; St-Yves, Ghislain. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-38674-4.

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2023Phylodynamic of SARS-CoV-2 during the second wave of COVID-19 in Peru. (2023). Rebello, Joao Renato ; Bouckaert, Remco ; Aguilar, Mauro Quiones ; Silva, Cinthy Jimenez ; Uribe, Carmen Sofia ; Arevalo, Santiago Justo. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-39216-8.

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2023Optimal strategies for coordinating infection control and socio-economic activities. (2023). Xiao, Yanni ; Li, Tangjuan. In: Mathematics and Computers in Simulation (MATCOM). RePEc:eee:matcom:v:207:y:2023:i:c:p:533-555.

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2023Combining probabilistic forecasts of COVID-19 mortality in the United States. (2023). Taylor, Kathryn S. In: European Journal of Operational Research. RePEc:eee:ejores:v:304:y:2023:i:1:p:25-41.

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2023Testing the predictive accuracy of COVID-19 forecasts. (2023). Paccagnini, Alessia ; Iacone, Fabrizio ; Coroneo, Laura ; Monteiro, Paulo Santos . In: International Journal of Forecasting. RePEc:eee:intfor:v:39:y:2023:i:2:p:606-622.

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2023Prediction intervals for economic fixed-event forecasts. (2022). Plett, Hendrik ; Kruger, Fabian. In: Papers. RePEc:arx:papers:2210.13562.

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2023.

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2023Comparing trained and untrained probabilistic ensemble forecasts of COVID-19 cases and deaths in the United States. (2023). Cramer, Estee Y ; Bracher, Johannes ; Bosse, Nikos I ; Reich, Nicholas G ; Biggerstaff, Matthew ; Tibshirani, Ryan J ; Bien, Jacob ; Zorn, Martha ; Brooks, Logan C ; Wang, Yijin ; Ray, Evan L ; Rumack, Aaron ; Johansson, Michael A ; Gerding, Aaron ; Funk, Sebastian. In: International Journal of Forecasting. RePEc:eee:intfor:v:39:y:2023:i:3:p:1366-1383.

Full description at Econpapers || Download Forecast combinations: An over 50-year review. (2023). Li, Feng ; Kang, Yanfei ; Hyndman, Rob J ; Wang, Xiao Qian. In: International Journal of Forecasting. RePEc:eee:intfor:v:39:y:2023:i:4:p:1518-1547.

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2023Modeling adaptive forward-looking behavior in epidemics on networks. (2023). Tizzoni, Michele ; Starnini, Michele ; Nemati, Lorenzo Amir. In: Papers. RePEc:arx:papers:2301.04947.

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2023Built environment as interface: a relation-based framework for the intersections between built, biotic, social, and health processes during COVID-19 and beyond. (2023). Keyser, Vadim ; Howland, Hannah. In: Palgrave Communications. RePEc:pal:palcom:v:10:y:2023:i:1:d:10.1057_s41599-023-01735-6.

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2023A nonstop thrill ride from genes to the assembly of the T3SS injectisome. (2023). Namboodiri, Sharanya ; Fishov, Itzhak. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-37753-w.

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2023Mutant fixation in the presence of a natural enemy. (2023). Komarova, Natalia L ; Wodarz, Dominik. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-41787-5.

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2023Annotation of natural product compound families using molecular networking topology and structural similarity fingerprinting. (2023). Linington, Roger G ; Gray, Christopher A ; Jake, F P ; Santen, Jeffrey A ; McMann, Emily J ; Clark, Trevor N ; Morehouse, Nicholas J. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-022-35734-z.

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2023MS2Query: reliable and scalable MS2 mass spectra-based analogue search. (2023). , Justin ; Huber, Florian ; Jansen, Robert S ; Vermeir, Femke J ; Camuzeaux, Stephane ; Chekmeneva, Elena ; de Jonge, Niek F. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-37446-4.

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2023Latent generative landscapes as maps of functional diversity in protein sequence space. (2023). Morcos, Faruck ; Sinner, Claude ; Martin, Jonathan ; Ziegler, Cheyenne. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-37958-z.

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2023Cell-free biosynthesis combined with deep learning accelerates de novo-development of antimicrobial peptides. (2023). Adam, David ; Erb, Tobias J ; Spahn, Christoph ; Pandi, Amir ; Vazquez, Olalla ; Braun, Peter ; Hummer, Gerhard ; Foroughijabbari, Yeganeh ; Schmeck, Bernd ; Kushwaha, Manish ; Abendroth, Frank ; Bobkova, Elizaveta ; Jung, Anna Lena ; Klabunde, Bjorn ; Bertrams, Wilhelm ; Burt, Marie ; Buttlar, Heiner ; Schaefer, Stefan L ; Bode, Helge B ; Trinh, Van Tuan ; von Strandmann, Elke Pogge ; Zare, Amir ; Preusser, Christian. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-42434-9.

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2023Effectiveness of feedback control and the trade-off between death by COVID-19 and costs of countermeasures. (2023). Matsuda, Hiroyuki ; Watanabe, Akira. In: Health Care Management Science. RePEc:kap:hcarem:v:26:y:2023:i:1:d:10.1007_s10729-022-09617-0.

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2023Analysis of a hybrid SIR model combining the fixed-moments pulse interventions with susceptibles-triggered threshold policy. (2023). Xiao, Yanni ; Li, Qian. In: Applied Mathematics and Computation. RePEc:eee:apmaco:v:453:y:2023:i:c:s0096300323002515.

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2023
2023Autoencoder neural networks enable low dimensional structure analyses of microbial growth dynamics. (2023). You, Lingchong ; Xu, Helen ; Ma, Helena R ; Baig, Yasa. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-43455-0.

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2023Treatment Performance of Municipal Sewage in a Submerged Membrane Bioreactor (SMBR) and Mechanism of Biochar to Reduce Membrane Fouling. (2023). Guo, Junyuan ; Jiang, Jianying. In: Sustainability. RePEc:gam:jsusta:v:15:y:2023:i:12:p:9239-:d:1166019.

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2023Modeling Eye Movements During Decision Making: A Review. (2023). Lans, Ralf ; Pieters, Rik ; Wedel, Michel. In: Psychometrika. RePEc:spr:psycho:v:88:y:2023:i:2:d:10.1007_s11336-022-09876-4.

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2023IMC-Denoise: a content aware denoising pipeline to enhance Imaging Mass Cytometry. (2023). Brennen, Nathaniel W ; Pachynski, Russell K ; Shim, Kevin G ; Ruzinova, Marianna B ; Bender, Diane E ; Oetjen, Karolyn A ; Lu, Peng ; Link, Daniel C ; Oh, Stephen T. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-37123-6.

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2023CellSighter: a neural network to classify cells in highly multiplexed images. (2023). Keren, Leeat ; Milo, Idan ; Bagon, Shai ; Feinstein, Ben ; Bussi, Yuval ; Amitay, Yael. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-40066-7.

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2023Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering. (2023). Mrdjen, Dunja ; Leow, Ke Xuan ; McCaffrey, Erin F ; Kong, Alex ; Greenwald, Noah F ; Liu, Candace C ; Angelo, Michael ; Varra, Sricharan Reddy ; Rumberger, Josef Lorenz ; Cannon, Bryan J. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-40068-5.

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2023Single-cell spatial metabolomics with cell-type specific protein profiling for tissue systems biology. (2023). Coskun, Ahmet F ; Beyaz, Semir ; Afkarian, Maryam ; Ievlev, Anton V ; Garipcan, Aybuke ; Yueh, Brian ; Henderson, Walter ; Cai, Shuangyi ; Allam, Mayar ; Hu, Thomas. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-43917-5.

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2023Cost-effective fault diagnosis of nearby photovoltaic systems using graph neural networks. (2023). Develder, Chris ; Spina, Domenico ; van Gompel, Jonas. In: Energy. RePEc:eee:energy:v:266:y:2023:i:c:s0360544222033308.

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2023The dichotomous role of anisotropic sensing in pattern generation and disruption. (2023). Nava-Sedeo, Josue Manik ; del Sol, Maria ; Deutsch, Andreas. In: Physica A: Statistical Mechanics and its Applications. RePEc:eee:phsmap:v:630:y:2023:i:c:s0378437123008166.

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2023Hopf bifurcation mechanism analysis in an improved cortex-basal ganglia network with distributed delays: An application to Parkinson’s disease. (2023). Xu, Minbo ; Zhou, Weiting ; Hu, Bing ; Wang, Zhizhi. In: Chaos, Solitons & Fractals. RePEc:eee:chsofr:v:166:y:2023:i:c:s0960077922012012.

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2023Contribution of pks+ E. coli mutations to colorectal carcinogenesis. (2023). Sottoriva, Andrea ; Graham, Trevor A ; Magnani, Luca ; James, Chela ; Fernandez-Mateos, Javier ; Spiteri, Inmaculada ; Heide, Timon ; Ramazzotti, Daniele ; Chen, Bingjie. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-43329-5.

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2023Using drivers and transmission pathways to identify SARS-like coronavirus spillover risk hotspots. (2023). Wilkinson, David A ; Muylaert, Renata L ; Alviola, Phillip ; John, Reju Sam ; Galli, Nikolas ; Rulli, Maria Cristina ; Dodorico, Paolo ; Kingston, Tigga. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-42627-2.

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2023Scalable Inverse Uncertainty Quantification by Hierarchical Bayesian Modeling and Variational Inference. (2023). Kozlowski, Tomasz ; Xie, Ziyu ; Wu, XU ; Wang, Chen. In: Energies. RePEc:gam:jeners:v:16:y:2023:i:22:p:7664-:d:1283648.

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2023The gut microbiome and early-life growth in a population with high prevalence of stunting. (2023). Humphrey, Jean H ; Baharmand, Iman ; Stoltzfus, Rebecca J ; Geum, Hyun Min ; Tome, Joice ; Evans, Ceri ; Francis, Freddy ; Gough, Ethan K ; Mutasa, Batsirai ; Tavengwa, Naume V ; Carr, Lynnea ; Majo, Florence D ; Edens, Thaddeus J ; Chasekwa, Bernard ; Robertson, Ruairi C ; Smith, Laura E ; Manges, Amee R ; Ntozini, Robert ; Prendergast, Andrew J ; Gill, Sandeep K. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-36135-6.

Full description at Econpapers || Download Gut microbiota alters host bile acid metabolism to contribute to intrahepatic cholestasis of pregnancy. (2023). Yang, Min ; Wang, Sumin ; Li, Pan ; He, Jialin ; Chen, Xia ; Liu, Shuang ; Ouyang, Qin ; Hu, Hua ; Tang, LI ; Tu, Dianji ; Lei, Yuanyuan ; Zhang, Longhui. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-36981-4.

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2023Altered human gut virome in patients undergoing antibiotics therapy for Helicobacter pylori. (2023). Leung, Wai K ; Yi, Suet ; Lau, Kam Shing ; Morgan, Daniel C ; Yao, Haobin ; Wang, Lingling. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-37975-y.

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2023Gut microbiome dysbiosis across early Parkinson’s disease, REM sleep behavior disorder and their first-degree relatives. (2023). Chen, Zigui ; Yeoh, Yun Kit ; Wing, Yun Kwok ; Zhang, Jihui ; Trenkwalder, Claudia ; Ma, Suk Ling ; Wang, Jing ; Lai, Hei Ming ; To, Ka Fai ; Liu, Yaping ; Wong, Sunny Hei ; Huang, Bei ; Zhou, LI. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-38248-4.

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2023Host-diet-gut microbiome interactions influence human energy balance: a randomized clinical trial. (2023). Pratley, Richard E ; Davis, Taylor L ; Marcus, Andrew ; Yi, Fanchao ; Igudesman, Daria ; Dirks, Blake ; Carnero, Elvis A ; Corbin, Karen D ; Smith, Steven R ; Krajmalnik-Brown, Rosa ; Rittmann, Bruce E. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-38778-x.

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2023Delayed gut microbiota maturation in the first year of life is a hallmark of pediatric allergic disease. (2023). Finlay, Brett B ; Mandhane, Piushkumar J ; Moraes, Theo J ; Becker, Allan B ; Bel, Kate L ; Turvey, Stuart E ; Petersen, Charisse ; Hoskinson, Courtney ; Subbarao, Padmaja ; Azad, Meghan B ; Kozyrskyj, Anita L ; Simons, Elinor. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-40336-4.

Full description at Econpapers || Download Mutual modulation of gut microbiota and the immune system in type 1 diabetes models. (2023). Serrano-Gomez, Gerard ; Panosa, Anais ; Cosovanu, Catalina ; Arpa, Berta ; Egia-Mendikute, Leire ; Varela, Encarna ; Yaez, Francisca ; Corral-Pujol, Marta ; Manichanh, Chaysavanh ; Santiago, Alba ; Verdaguer, Joan ; Rosell-Mases, Estela ; Mora, Conchi. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-43652-x.

Full description at Econpapers || Download Sampling-based Bayesian inference in recurrent circuits of stochastic spiking neurons. (2023). Wu, SI ; Zhang, Wen-Hao ; Doiron, Brent ; Josi, Kreimir. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-41743-3.

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2023An integrated chance constraints approach for optimal vaccination strategies under uncertainty for COVID-19. (2023). Ntaimo, Lewis ; Gujjula, Krishna Reddy ; Gong, Jiangyue. In: Socio-Economic Planning Sciences. RePEc:eee:soceps:v:87:y:2023:i:pa:s0038012123000472.

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2023High monoclonal neutralization titers reduced breakthrough HIV-1 viral loads in the Antibody Mediated Prevention trials. (2023). Montefiori, David C ; Sobieszczyk, Magdalena E ; Seaton, Kelly E ; Gilbert, Peter B ; Casapia, Martin ; Mullins, James I ; Juraska, Michal ; Goepfert, Paul A ; Williamson, Carolyn ; Magaret, Craig A ; Orrell, Catherine ; Mkhize, Nonhlanhla N ; Carpp, Lindsay N ; Naidoo, Logashvari ; Morris, Lynn ; Zhang, BO ; Corey, Lawrence ; Edlefsen, Paul ; Huang, Yunda ; Cohen, Myron S ; Rossenkhan, Raabya ; Decamp, Allan C ; Ledgerwood, Julie E ; Schiffer, Joshua T ; Mayer, Bryan T ; Mgodi, Nyaradzo ; Cardozo-Ojeda, Fabian E ; Edupuganti, Srilatha ; Reeves, Daniel B ; Andrew, Philip ; Bar, Katharine J ; Karuna, Shelly T ; Tomaras, Georgia D. In: Nature Co
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2022Spatial dynamics of a fractional predator-prey system with time delay and Allee effect. (2022). Ouyang, Miao ; Liu, Shutang ; Bi, Zhimin. In: Chaos, Solitons & Fractals. RePEc:eee:chsofr:v:162:y:2022:i:c:s0960077922006440.

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2022.

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2022Tracking changes in SARS-CoV-2 transmission with a novel outpatient sentinel surveillance system in Chicago, USA. (2022). Pacilli, Massimo ; Ghinai, Isaac ; Cobey, Sarah ; Lightner, Shannon ; Gerardin, Jaline ; Holden, Tobias M ; Arevalo, Philip ; Jorgensen, Emile ; Richardson, Reese ; Gostic, Katelyn M. In: Nature Communications. RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-33317-6.

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Recent citations received in 2021
YearCiting document
2021A spline-based time-varying reproduction number for modelling epidemiological outbreaks. (2021). Pircalabelu, Eugen. In: LIDAM Discussion Papers ISBA. RePEc:aiz:louvad:2021030.

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2021Modeling and forecasting the COVID?19 pandemic time?series data. (2021). Hendry, David ; Castle, Jennifer ; Doornik, Jurgen A. In: Social Science Quarterly. RePEc:bla:socsci:v:102:y:2021:i:5:p:2070-2087.

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2021Media discourses about a superspreader destination: How mismanagement of Covid-19 triggers debates about sustainability and geopolitics. (2021). Peters, Mike ; Pikkemaat, Birgit ; Bichler, Bernhard Fabian ; Mayer, Marius. In: Annals of Tourism Research. RePEc:eee:anture:v:91:y:2021:i:c:s0160738321001560.

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2021Quantifying previous SARS-CoV-2 infection through mixture modelling of antibody levels. (2021). Agweyu, A ; Bottomley, C ; I. M. O. Adetifa, ; Nyagwange, J ; Karanja, H ; Gitonga, J ; Mugo, D ; Etyang, A O ; Kagucia, E W ; J. A. G. Scott, ; Gallagher, K ; Warimwe, G M ; Uyoga, S ; Nokes, D J ; Otiende, M. In: Nature Communications. RePEc:nat:natcom:v:12:y:2021:i:1:d:10.1038_s41467-021-26452-z.

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2021The generative capacity of probabilistic protein sequence models. (2021). McGee, Francisco ; Haldane, Allan ; Carnevale, Vincenzo ; Levy, Ronald M ; Vucetic, Slobodan ; Novinger, Quentin ; Hauri, Sandro. In: Nature Communications. RePEc:nat:natcom:v:12:y:2021:i:1:d:10.1038_s41467-021-26529-9.

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2021scCODA is a Bayesian model for compositional single-cell data analysis. (2021). Schubert, B ; Theis, F J ; Muller, C L ; Ostner, J ; Buttner, M. In: Nature Communications. RePEc:nat:natcom:v:12:y:2021:i:1:d:10.1038_s41467-021-27150-6.

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2021Perceptions of risk for COVID-19 among individuals with chronic diseases and stakeholders in Central Appalachia. (2021). Awasthi, Manul ; Stewart, David W ; Dowling-McClay, Karilynn ; Weierbach, Florence M ; Mamudu, Hadii M ; Ahuja, Manik ; Paul, Timir K. In: Palgrave Communications. RePEc:pal:palcom:v:8:y:2021:i:1:d:10.1057_s41599-021-00906-7.

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2021Cluster size distribution of cells disseminating from a primary tumor. (2021). Levine, Herbert ; Mukherjee, Mrinmoy. In: PLOS Computational Biology. RePEc:plo:pcbi00:1009011.

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2021Novelty is not surprise: Human exploratory and adaptive behavior in sequential decision-making. (2021). Herzog, Michael H ; Gerstner, Wulfram ; Lehmann, Marco P ; Modirshanechi, Alireza ; Xu, He A. In: PLOS Computational Biology. RePEc:plo:pcbi00:1009070.

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2021Phenotypic-dependent variability and the emergence of tolerance in bacterial populations. (2021). Muoz, Miguel A ; Sireci, Matteo ; Mateu, Jose Camacho. In: PLOS Computational Biology. RePEc:plo:pcbi00:1009417.

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2021The role of competition versus cooperation in microbial community coalescence. (2021). Pawar, Samraat ; Smith, Thomas P ; Cook, Jacob ; Clegg, Tom ; Lechon-Alonso, Pablo. In: PLOS Computational Biology. RePEc:plo:pcbi00:1009584.

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2021Strategie di governo e strutture egemoniche in tempo di pandemia. (2021). Bellanca, Nicolo', . In: MPRA Paper. RePEc:pra:mprapa:111234.

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Recent citations received in 2020
YearCiting document
2020Socioeconomic Network Heterogeneity and Pandemic Policy Response. (2020). Cook, Cody ; Akbarpour, Mohammad ; Yang, Hanbin ; Vasserman, Shoshana ; Tebaldi, Pietro ; Saccarola, Matteo ; Nagaraj, Abhishek ; Mongey, Simon ; Marzuoli, Aude. In: Working Papers. RePEc:bfi:wpaper:2020-75.

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2020Disentangling the biotic and abiotic drivers of emergent migratory behavior using individual-based models. (2020). Fiechter, Jerome ; Bograd, Steven J ; Abrahms, Briana ; Dodson, Stephanie ; Hazen, Elliott L. In: Ecological Modelling. RePEc:eee:ecomod:v:432:y:2020:i:c:s0304380020302957.

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2020.

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2020Socioeconomic Network Heterogeneity and Pandemic Policy Response. (2020). Vasserman, Shoshana ; Tebaldi, Pietro ; Mongey, Simon ; Marzuoli, Aude ; Cook, Cody ; Akbarpour, Mohammad ; Yang, Hanbin ; Saccarola, Matteo ; Nagaraj, Abhishek. In: NBER Working Papers. RePEc:nbr:nberwo:27374.

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2020Limits on amplifiers of natural selection under death-Birth updating. (2020). Nowak, Martin A ; Chatterjee, Krishnendu ; Pavlogiannis, Andreas ; Tkadlec, Josef. In: PLOS Computational Biology. RePEc:plo:pcbi00:1007494.

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2020Transient amplifiers of selection and reducers of fixation for death-Birth updating on graphs. (2020). Lippner, Gabor ; Parke, Darren ; Kolodny, Joshua ; Brizuela, Lori ; Steinhagen, Patricia ; Withers, James ; Jencks, Robert ; Sample, Christine ; Allen, Benjamin ; Dementieva, Yulia A. In: PLOS Computational Biology. RePEc:plo:pcbi00:1007529.

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2020Time varying methods to infer extremes in dengue transmission dynamics. (2020). Cook, Alex R ; Ng, Lee Ching ; Lee, Borame Sue ; Han, Yi Ting ; Lim, Jue Tao. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008279.

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2020The Moran process on 2-chromatic graphs. (2020). Nowak, Martin A ; Chatterjee, Krishnendu ; McAvoy, Alex ; Kaveh, Kamran. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008402.

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2020Ten simple rules for starting research in your late teens. (2020). Bourne, Philip E ; Chalupa, Jack ; Newbury, Abigail M ; Mura, Cameron. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008403.

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2020Modeling habitat connectivity in support of multiobjective species movement: An application to amphibian habitat systems. (2020). Trauth, Kathleen M ; Gholamialam, Ashkan ; Matisziw, Timothy C. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008540.

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2020Impact of sars-cov-2 interventions on dengue transmission. (2020). Cook, Alex R ; Ng, Lee Ching ; Aik, Joel ; Koo, Joel Ruihan ; Li, Esther ; Xiong, Lawrence Zheng ; Lee, Borame Sue ; Lim, Jue Tao. In: PLOS Neglected Tropical Diseases. RePEc:plo:pntd00:0008719.

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2020Two-step multi-omics modelling of drug sensitivity in cancer cell lines to identify driving mechanisms. (2020). Schuppert, Andreas ; Kusch, Nina. In: PLOS ONE. RePEc:plo:pone00:0238961.

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2020Directionally dependent multi-view clustering using copula model. (2020). Mallick, Bani K ; Lee, Se Yoon ; Souris, Allyson ; Karimi, Mostafa ; Iquebal, Ashif S ; Afrin, Kahkashan. In: PLOS ONE. RePEc:plo:pone00:0238996.

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2020Societal and economic factors associated with COVID-19 indicate that developing countries could suffer the most. (2020). Foster, Kathleen Lois ; Selvitella, Alessandro Maria. In: Technium Social Sciences Journal. RePEc:tec:journl:v:10:y:2020:i:1:p:637-644.

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2020.

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