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PLOS Computational Biology / Public Library of Science

Citation Profile [Updated: 2024-12-09 13:41:37]
5 Years H Index
21
Impact Factor (IF)
0.14
5 Years IF
0.14
Data available in this report

[Raw data] [50 most cited papers] [50 most relevant papers] [cites used to compute IF] [Recent citations ][Frequent citing series ] [more data in EconPapers] [trace new citations] [Missing citations? Add them now] [Incorrect content? Let us know]

Main indicators
Raw Data

 

IF AIF CIF IF5 DOC CDO CIT NCI CCU D2Y C2Y D5Y C5Y SC %SC CiY II AII
2005 0 0.51 0 0 13 13 36 1 0 0 0 0 0.24
2006 0.38 0.51 0.14 0.38 38 51 189 7 8 13 5 13 5 7 100 2 0.05 0.23
2007 0.25 0.47 0.23 0.25 64 115 198 26 34 51 13 51 13 23 88.5 3 0.05 0.2
2008 0.23 0.49 0.14 0.21 90 205 224 29 63 102 23 115 24 18 62.1 2 0.02 0.23
2009 0.16 0.48 0.13 0.15 102 307 293 41 104 154 24 205 31 28 68.3 3 0.03 0.24
2010 0.2 0.49 0.16 0.17 119 426 483 69 173 192 38 307 53 43 62.3 3 0.03 0.21
2011 0.2 0.52 0.19 0.2 128 554 366 106 279 221 45 413 83 44 41.5 7 0.05 0.24
2012 0.25 0.52 0.23 0.23 142 696 248 163 442 247 62 503 117 65 39.9 8 0.06 0.22
2013 0.21 0.56 0.25 0.25 161 857 340 216 658 270 56 581 147 89 41.2 7 0.04 0.24
2014 0.14 0.55 0.2 0.19 196 1053 383 209 867 303 42 652 123 116 55.5 6 0.03 0.23
2015 0.17 0.55 0.19 0.17 208 1261 472 242 1109 357 60 746 127 134 55.4 6 0.03 0.23
2016 0.16 0.53 0.17 0.14 187 1448 300 246 1355 404 63 835 113 146 59.3 10 0.05 0.21
2017 0.17 0.54 0.19 0.16 213 1661 323 316 1671 395 68 894 142 192 60.8 7 0.03 0.22
2018 0.13 0.55 0.15 0.14 182 1843 204 275 1946 400 53 965 136 116 42.2 4 0.02 0.23
2019 0.17 0.57 0.19 0.17 240 2083 166 390 2336 395 69 986 164 231 59.2 7 0.03 0.23
2020 0.13 0.68 0.18 0.16 285 2368 193 433 2769 422 54 1030 160 195 45 18 0.06 0.32
2021 0.14 0.8 0.16 0.15 342 2710 172 438 3207 525 75 1107 171 100 22.8 14 0.04 0.29
2022 0.14 0.84 0.2 0.17 78 2788 9 558 3765 627 90 1262 214 11 2 3 0.04 0.25
IF: Two years Impact Factor: C2Y / D2Y
AIF: Average Impact Factor for all series in RePEc in year y
CIF: Cumulative impact factor
IF5: Five years Impact Factor: C5Y / D5Y
DOC: Number of documents published in year y
CDO: Cumulative number of documents published until year y
CIT: Number of citations to papers published in year y
NCI: Number of citations in year y
CCU: Cumulative number of citations to papers published until year y
D2Y: Number of articles published in y-1 plus y-2
C2Y: Cites in y to articles published in y-1 plus y-2
D5Y: Number of articles published in y-1 until y-5
C5Y: Cites in y to articles published in y-1 until y-5
SC: selft citations in y to articles published in y-1 plus y-2
%SC: Percentage of selft citations in y to articles published in y-1 plus y-2
CiY: Cites in year y to documents published in year y
II: Immediacy Index: CiY / Documents.
AII: Average Immediacy Index for series in RePEc in year y
50 most cited documents in this series
#YearTitleCited
12010Evolutionary Establishment of Moral and Double Moral Standards through Spatial Interactions. (2010). Szabo, Gyorgy ; Perc, Matja ; Szolnoki, Attila ; Helbing, Dirk. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000758.

Full description at Econpapers || Download paper

91
22006Cooperation Prevails When Individuals Adjust Their Social Ties. (2006). Lenaerts, Tom ; Pacheco, Jorge M ; Santos, Francisco C. In: PLOS Computational Biology. RePEc:plo:pcbi00:0020140.

Full description at Econpapers || Download paper

86
32013Software for Computing and Annotating Genomic Ranges. (2013). Carey, Vincent J ; Morgan, Martin T ; Gentleman, Robert ; Carlson, Marc ; Aboyoun, Patrick ; Pages, Herve ; Huber, Wolfgang ; Lawrence, Michael. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003118.

Full description at Econpapers || Download paper

82
42015MAGMA: Generalized Gene-Set Analysis of GWAS Data. (2015). Posthuma, Danielle ; Heskes, Tom ; Mooij, Joris M ; de Leeuw, Christiaan A. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004219.

Full description at Econpapers || Download paper

61
52010Game Theory of Social Distancing in Response to an Epidemic. (2010). Reluga, Timothy C. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000793.

Full description at Econpapers || Download paper

57
62010Dynamics and Control of Diseases in Networks with Community Structure. (2010). Jones, James H ; Salathe, Marcel. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000736.

Full description at Econpapers || Download paper

53
72018Punishment and inspection for governing the commons in a feedback-evolving game. (2018). Szolnoki, Attila ; Chen, Xiaojie. In: PLOS Computational Biology. RePEc:plo:pcbi00:1006347.

Full description at Econpapers || Download paper

50
82007Universally Sloppy Parameter Sensitivities in Systems Biology Models. (2007). Sethna, James P ; Myers, Christopher R ; Brown, Kevin S ; Casey, Fergal P ; Waterfall, Joshua J ; Gutenkunst, Ryan N. In: PLOS Computational Biology. RePEc:plo:pcbi00:0030189.

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42
92017OpenMM 7: Rapid development of high performance algorithms for molecular dynamics. (2017). Harrigan, Matthew P ; Simmonett, Andrew C ; Wang, Lee-Ping ; Beauchamp, Kyle A ; Zhao, Yutong ; McGibbon, Robert T ; Chodera, John D ; Pande, Vijay S ; Swails, Jason ; Brooks, Bernard R ; Eastman, Peter ; Wiewiora, Rafal P ; Stern, Chaya D. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005659.

Full description at Econpapers || Download paper

40
102012Evolutionary Game Theory and Social Learning Can Determine How Vaccine Scares Unfold. (2012). Bhattacharyya, Samit ; Bauch, Chris T. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002452.

Full description at Econpapers || Download paper

35
112015Sparse and Compositionally Robust Inference of Microbial Ecological Networks. (2015). Bonneau, Richard A ; Blaser, Martin J ; Littman, Dan R ; Miraldi, Emily R ; Muller, Christian L ; Kurtz, Zachary D. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004226.

Full description at Econpapers || Download paper

30
122021Multivariable association discovery in population-scale meta-omics studies. (2021). Huttenhower, Curtis ; Ren, Boyu ; Bravo, Hector Corrada ; Weingart, George ; Franzosa, Eric A ; Tickle, Timothy L ; Paulson, Joseph N ; Nguyen, Long H ; Waldron, Levi ; Zhang, Yancong ; Lu, Yiren ; Ma, Siyuan ; Subramanian, Ayshwarya ; McIver, Lauren J ; Wilkinson, Jeremy E ; Rahnavard, Ali ; Thompson, Kelsey N ; Mallick, Himel ; Chatterjee, Suvo ; Schwager, Emma H. In: PLOS Computational Biology. RePEc:plo:pcbi00:1009442.

Full description at Econpapers || Download Approximate Bayesian Computation. (2013). Dessimoz, Christophe ; Foll, Matthieu ; Corander, Jukka ; Numminen, Elina ; Busetto, Alberto Giovanni ; Sunnker, Mikael. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002803.

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27
142020Practical considerations for measuring the effective reproductive number, Rt. (2020). Bonhoeffer, Sebastian ; Hay, James A ; Scire, Jeremie ; Niehus, Rene ; Huisman, Jana S ; Kahn, Rebecca ; White, Laura F ; Tedijanto, Christine ; Thompson, Robin N ; Joshi, Keya ; Sherrat, Katharine ; Abbott, Sam ; Cobey, Sarah ; Bosse, Nikos I ; Baskerville, Edward B ; Lipsitch, Marc ; Munday, James D ; McGough, Lauren ; Funk, Sebastian ; Meakin, Sophie ; Gostic, Katelyn M ; Wallinga, Jacco ; Hellewell, Joel ; Stadler, Tanja ; de Salazar, Pablo M. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008409.

Full description at Econpapers || Download Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible. (2014). Holmes, Susan ; McMurdie, Paul J. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003531.

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26
162011Mitigation Strategies for Pandemic Influenza A: Balancing Conflicting Policy Objectives. (2011). Anderson, Roy M ; Heesterbeek, Hans ; Klinkenberg, Don ; Hollingsworth, Deirdre T. In: PLOS Computational Biology. RePEc:plo:pcbi00:1001076.

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24
172011Accelerated Profile HMM Searches. (2011). Eddy, Sean R. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002195.

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23
182014VBA: A Probabilistic Treatment of Nonlinear Models for Neurobiological and Behavioural Data. (2014). Rigoux, Lionel ; Adam, Vincent ; Daunizeau, Jean. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003441.

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23
192009Semantic Similarity in Biomedical Ontologies. (2009). Couto, Francisco M ; Lord, Phillip ; Falco, Andre O ; Faria, Daniel ; Pesquita, Catia. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000443.

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23
202009Broadband Criticality of Human Brain Network Synchronization. (2009). Bullmore, ED ; Christensen, Soren R ; Smith, Marie L ; Kitzbichler, Manfred G. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000314.

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22
212014A Toolbox for Representational Similarity Analysis. (2014). Kriegeskorte, Nikolaus ; Marslen-Wilson, William ; Su, LI ; Walther, Alexander ; Wingfield, Cai ; Nili, Hamed. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003553.

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21
222014Evolutionary Game Dynamics in Populations with Heterogenous Structures. (2014). Hauert, Christoph ; Fu, Feng ; Maciejewski, Wes. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003567.

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21
232017Fast online deconvolution of calcium imaging data. (2017). Paninski, Liam ; Zhou, Pengcheng ; Friedrich, Johannes. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005423.

Full description at Econpapers || Download paper

20
242009Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples. (2009). Pop, Mihai ; Nagarajan, Niranjan ; White, James Robert. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000352.

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20
252011How Structure Determines Correlations in Neuronal Networks. (2011). Rotter, Stefan ; Cardanobile, Stefano ; Staude, Benjamin ; Pernice, Volker. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002059.

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19
262015VDJtools: Unifying Post-analysis of T Cell Receptor Repertoires. (2015). Zvyagin, Ivan V ; Nazarov, Vadim I ; Pogorelyy, Mikhail V ; Putintseva, Ekaterina V ; Britanova, Olga V ; Bolotin, Dmitriy A ; Turchaninova, Maria A ; Chudakov, Dmitriy M ; Bagaev, Dmitriy V ; Skorobogatova, Elena V ; Shugay, Mikhail ; Kirgizov, Kirill I ; Kirgizova, Vitalina I. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004503.

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18
272010Associating Genes and Protein Complexes with Disease via Network Propagation. (2010). Sharan, Roded ; Shlomi, Tomer ; Ruppin, Eytan ; Magger, Oded ; Vanunu, Oron. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000641.

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18
282009Population Structure Induces a Symmetry Breaking Favoring the Emergence of Cooperation. (2009). Pinheiro, Flávio ; Santos, Francisco C ; Pacheco, Jorge M. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000596.

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18
292010Comparing Families of Dynamic Causal Models. (2010). Leff, Alex P ; Schofield, Thomas M ; Friston, Karl J ; Rosa, Maria J ; Daunizeau, Jean ; Stephan, Klaas E ; Penny, Will D. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000709.

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18
302007Machine Learning and Its Applications to Biology. (2007). Drghici, Sorin ; Romero, Roberto ; Chen, Xue-Wen ; Carey, Vincent J ; Tarca, Adi L. In: PLOS Computational Biology. RePEc:plo:pcbi00:0030116.

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17
312016Efficient Coalescent Simulation and Genealogical Analysis for Large Sample Sizes. (2016). McVean, Gilean ; Etheridge, Alison M ; Kelleher, Jerome. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004842.

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17
322017mixOmics: An R package for ‘omics feature selection and multiple data integration. (2017). le Cao, Kim-Anh ; Singh, Amrit ; Gautier, Benoit ; Rohart, Florian . In: PLOS Computational Biology. RePEc:plo:pcbi00:1005752.

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17
332014Comparison of Filtering Methods for the Modeling and Retrospective Forecasting of Influenza Epidemics. (2014). Shaman, Jeffrey ; Karspeck, Alicia ; Yang, Wan. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003583.

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16
342014On the Origins of Suboptimality in Human Probabilistic Inference. (2014). Wolpert, Daniel M ; Vijayakumar, Sethu ; Acerbi, Luigi. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003661.

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16
352011Risk, Unexpected Uncertainty, and Estimation Uncertainty: Bayesian Learning in Unstable Settings. (2011). Bossaerts, Peter ; Payzan-Lenestour, Elise. In: PLOS Computational Biology. RePEc:plo:pcbi00:1001048.

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16
362016Reinforcement Learning Explains Conditional Cooperation and Its Moody Cousin. (2016). Masuda, Naoki ; Takezawa, Masanori ; Horita, Yutaka ; Ezaki, Takahiro. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005034.

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16
372008Support Vector Machines and Kernels for Computational Biology. (2008). Ratsch, Gunnar ; Scholkopf, Bernhard ; Sonnenburg, Soren ; Ong, Cheng Soon ; Ben-Hur, Asa. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000173.

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16
382006Nonoptimal Component Placement, but Short Processing Paths, due to Long-Distance Projections in Neural Systems. (2006). Hilgetag, Claus C ; Kaiser, Marcus . In: PLOS Computational Biology. RePEc:plo:pcbi00:0020095.

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16
392008Hierarchical Models in the Brain. (2008). Friston, Karl. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000211.

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15
402010Probability Matching as a Computational Strategy Used in Perception. (2010). Shams, Ladan ; Beierholm, Ulrik R ; Wozny, David R. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000871.

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15
412010A Bayesian Framework to Account for Complex Non-Genetic Factors in Gene Expression Levels Greatly Increases Power in eQTL Studies. (2010). Winn, John ; Durbin, Richard ; Parts, Leopold ; Stegle, Oliver. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000770.

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15
422010Parameter Estimation and Model Selection in Computational Biology. (2010). Khammash, Mustafa ; Lillacci, Gabriele. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000696.

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15
432016MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data. (2016). Tappu, Rewati ; Ruscheweyh, Hans-Joachim ; Mitra, Suparna ; El-Hadidi, Mohamed ; Gorska, Anna ; Flade, Isabell ; Beier, Sina ; Huson, Daniel H. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004957.

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14
442005Ten Simple Rules for Getting Published. (2005). Bourne, Philip E. In: PLOS Computational Biology. RePEc:plo:pcbi00:0010057.

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14
452020Estimation of country-level basic reproductive ratios for novel Coronavirus (SARS-CoV-2/COVID-19) using synthetic contact matrices. (2020). Keeling, Matt J ; Hilton, Joe. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008031.

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14
462015Emergence of Shared Intentionality Is Coupled to the Advance of Cumulative Culture. (2015). Newton, Jonathan ; Angus, Simon. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004587.

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14
472015Flexible Modeling of Epidemics with an Empirical Bayes Framework. (2015). Rosenfeld, Roni ; Tibshirani, Ryan J ; Hyun, Sangwon ; Farrow, David C ; Brooks, Logan C. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004382.

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14
482009Pairwise Maximum Entropy Models for Studying Large Biological Systems: When They Can Work and When They Cant. (2009). Latham, Peter E ; Nirenberg, Sheila ; Roudi, Yasser. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000380.

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13
492011Simulated Epidemics in an Empirical Spatiotemporal Network of 50,185 Sexual Contacts. (2011). Rocha, Luis ; Holme, Petter ; Liljeros, Fredrik ; Luis , . In: PLOS Computational Biology. RePEc:plo:pcbi00:1001109.

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13
502015The Sense of Confidence during Probabilistic Learning: A Normative Account. (2015). Dehaene, Stanislas ; Schlunegger, Daniel ; Meyniel, Florent. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004305.

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13
50 most relevant documents in this series (papers most cited in the last two years)
#YearTitleCited
12013Software for Computing and Annotating Genomic Ranges. (2013). Carey, Vincent J ; Morgan, Martin T ; Gentleman, Robert ; Carlson, Marc ; Aboyoun, Patrick ; Pages, Herve ; Huber, Wolfgang ; Lawrence, Michael. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003118.

Full description at Econpapers || Download paper

77
22015MAGMA: Generalized Gene-Set Analysis of GWAS Data. (2015). Posthuma, Danielle ; Heskes, Tom ; Mooij, Joris M ; de Leeuw, Christiaan A. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004219.

Full description at Econpapers || Download paper

53
32017OpenMM 7: Rapid development of high performance algorithms for molecular dynamics. (2017). Harrigan, Matthew P ; Simmonett, Andrew C ; Wang, Lee-Ping ; Beauchamp, Kyle A ; Zhao, Yutong ; McGibbon, Robert T ; Chodera, John D ; Pande, Vijay S ; Swails, Jason ; Brooks, Bernard R ; Eastman, Peter ; Wiewiora, Rafal P ; Stern, Chaya D. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005659.

Full description at Econpapers || Download paper

39
42010Evolutionary Establishment of Moral and Double Moral Standards through Spatial Interactions. (2010). Szabo, Gyorgy ; Perc, Matja ; Szolnoki, Attila ; Helbing, Dirk. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000758.

Full description at Econpapers || Download paper

37
52018Punishment and inspection for governing the commons in a feedback-evolving game. (2018). Szolnoki, Attila ; Chen, Xiaojie. In: PLOS Computational Biology. RePEc:plo:pcbi00:1006347.

Full description at Econpapers || Download paper

29
62021Multivariable association discovery in population-scale meta-omics studies. (2021). Huttenhower, Curtis ; Ren, Boyu ; Bravo, Hector Corrada ; Weingart, George ; Franzosa, Eric A ; Tickle, Timothy L ; Paulson, Joseph N ; Nguyen, Long H ; Waldron, Levi ; Zhang, Yancong ; Lu, Yiren ; Ma, Siyuan ; Subramanian, Ayshwarya ; McIver, Lauren J ; Wilkinson, Jeremy E ; Rahnavard, Ali ; Thompson, Kelsey N ; Mallick, Himel ; Chatterjee, Suvo ; Schwager, Emma H. In: PLOS Computational Biology. RePEc:plo:pcbi00:1009442.

Full description at Econpapers || Download Game Theory of Social Distancing in Response to an Epidemic. (2010). Reluga, Timothy C. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000793.

Full description at Econpapers || Download paper

23
82020Practical considerations for measuring the effective reproductive number, Rt. (2020). Bonhoeffer, Sebastian ; Hay, James A ; Scire, Jeremie ; Niehus, Rene ; Huisman, Jana S ; Kahn, Rebecca ; White, Laura F ; Tedijanto, Christine ; Thompson, Robin N ; Joshi, Keya ; Sherrat, Katharine ; Abbott, Sam ; Cobey, Sarah ; Bosse, Nikos I ; Baskerville, Edward B ; Lipsitch, Marc ; Munday, James D ; McGough, Lauren ; Funk, Sebastian ; Meakin, Sophie ; Gostic, Katelyn M ; Wallinga, Jacco ; Hellewell, Joel ; Stadler, Tanja ; de Salazar, Pablo M. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008409.

Full description at Econpapers || Download Cooperation Prevails When Individuals Adjust Their Social Ties. (2006). Lenaerts, Tom ; Pacheco, Jorge M ; Santos, Francisco C. In: PLOS Computational Biology. RePEc:plo:pcbi00:0020140.

Full description at Econpapers || Download paper

19
102015Sparse and Compositionally Robust Inference of Microbial Ecological Networks. (2015). Bonneau, Richard A ; Blaser, Martin J ; Littman, Dan R ; Miraldi, Emily R ; Muller, Christian L ; Kurtz, Zachary D. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004226.

Full description at Econpapers || Download paper

17
112012Evolutionary Game Theory and Social Learning Can Determine How Vaccine Scares Unfold. (2012). Bhattacharyya, Samit ; Bauch, Chris T. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002452.

Full description at Econpapers || Download paper

17
122015VDJtools: Unifying Post-analysis of T Cell Receptor Repertoires. (2015). Zvyagin, Ivan V ; Nazarov, Vadim I ; Pogorelyy, Mikhail V ; Putintseva, Ekaterina V ; Britanova, Olga V ; Bolotin, Dmitriy A ; Turchaninova, Maria A ; Chudakov, Dmitriy M ; Bagaev, Dmitriy V ; Skorobogatova, Elena V ; Shugay, Mikhail ; Kirgizov, Kirill I ; Kirgizova, Vitalina I. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004503.

Full description at Econpapers || Download paper

16
132017Fast online deconvolution of calcium imaging data. (2017). Paninski, Liam ; Zhou, Pengcheng ; Friedrich, Johannes. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005423.

Full description at Econpapers || Download paper

16
142017mixOmics: An R package for ‘omics feature selection and multiple data integration. (2017). le Cao, Kim-Anh ; Singh, Amrit ; Gautier, Benoit ; Rohart, Florian . In: PLOS Computational Biology. RePEc:plo:pcbi00:1005752.

Full description at Econpapers || Download paper

15
152016Efficient Coalescent Simulation and Genealogical Analysis for Large Sample Sizes. (2016). McVean, Gilean ; Etheridge, Alison M ; Kelleher, Jerome. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004842.

Full description at Econpapers || Download paper

12
162016Reinforcement Learning Explains Conditional Cooperation and Its Moody Cousin. (2016). Masuda, Naoki ; Takezawa, Masanori ; Horita, Yutaka ; Ezaki, Takahiro. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005034.

Full description at Econpapers || Download paper

12
172014Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible. (2014). Holmes, Susan ; McMurdie, Paul J. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003531.

Full description at Econpapers || Download paper

10
182016MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data. (2016). Tappu, Rewati ; Ruscheweyh, Hans-Joachim ; Mitra, Suparna ; El-Hadidi, Mohamed ; Gorska, Anna ; Flade, Isabell ; Beier, Sina ; Huson, Daniel H. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004957.

Full description at Econpapers || Download paper

10
192021Evaluating epidemic forecasts in an interval format. (2021). Reich, Nicholas G ; Gneiting, Tilmann ; Ray, Evan L ; Bracher, Johannes. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008618.

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10
202017Mindboggling morphometry of human brains. (2017). Reuter, Martin ; Rossa, Brian ; Lee, Noah ; Stavsky, Eliezer ; Hame, Yrjo ; Giard, Joachim ; Bao, Forrest S ; Ghosh, Satrajit S ; Klein, Arno ; Keshavan, Anisha ; Neto, Elias Chaibub. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005350.

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10
212013Approximate Bayesian Computation. (2013). Dessimoz, Christophe ; Foll, Matthieu ; Corander, Jukka ; Numminen, Elina ; Busetto, Alberto Giovanni ; Sunnker, Mikael. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002803.

Full description at Econpapers || Download paper

10
222016Cytofkit: A Bioconductor Package for an Integrated Mass Cytometry Data Analysis Pipeline. (2016). Chan-Lau, Jorge ; Chen, Jin Miao ; Poidinger, Michael ; Newell, Evan W ; Wong, Michael Thomas. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005112.

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9
232010A Bayesian Framework to Account for Complex Non-Genetic Factors in Gene Expression Levels Greatly Increases Power in eQTL Studies. (2010). Winn, John ; Durbin, Richard ; Parts, Leopold ; Stegle, Oliver. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000770.

Full description at Econpapers || Download paper

9
242010Dynamics and Control of Diseases in Networks with Community Structure. (2010). Jones, James H ; Salathe, Marcel. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000736.

Full description at Econpapers || Download paper

9
252014A Toolbox for Representational Similarity Analysis. (2014). Kriegeskorte, Nikolaus ; Marslen-Wilson, William ; Su, LI ; Walther, Alexander ; Wingfield, Cai ; Nili, Hamed. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003553.

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8
262014VBA: A Probabilistic Treatment of Nonlinear Models for Neurobiological and Behavioural Data. (2014). Rigoux, Lionel ; Adam, Vincent ; Daunizeau, Jean. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003441.

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272015Asymmetric Evolutionary Games. (2015). Hauert, Christoph ; McAvoy, Alex. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004349.

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282016Machine Learning Meta-analysis of Large Metagenomic Datasets: Tools and Biological Insights. (2016). Segata, Nicola ; Waldron, Levi ; Malik, Faizan ; Truong, Duy Tin ; Pasolli, Edoardo. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004977.

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292009Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples. (2009). Pop, Mihai ; Nagarajan, Niranjan ; White, James Robert. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000352.

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302017ROTS: An R package for reproducibility-optimized statistical testing. (2017). Elo, Laura L ; Faux, Thomas ; Jaakkola, Maria K ; Seyednasrollah, Fatemeh ; Suomi, Tomi. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005562.

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312021MAUI (MBI Analysis User Interface)—An image processing pipeline for Multiplexed Mass Based Imaging. (2021). Keren, Leeat ; Angelo, Michael ; Mrdjen, Dunja ; Oliveria, John-Paul ; Greenbaum, Shirley ; Milo, Idan ; Baranski, Alex. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008887.

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322021Spec2Vec: Improved mass spectral similarity scoring through learning of structural relationships. (2021). , Justin ; Rogers, Simon ; Diblen, Faruk ; Spaaks, Jurriaan H ; Verhoeven, Stefan ; Ridder, Lars ; Huber, Florian. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008724.

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332019Evolutionary multiplayer games on graphs with edge diversity. (2019). Wang, Long ; Zhou, Lei ; Su, QI. In: PLOS Computational Biology. RePEc:plo:pcbi00:1006947.

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342012Exploring Massive, Genome Scale Datasets with the GenometriCorr Package. (2012). Wheelan, Sarah J ; Makeev, Vsevolod J ; Mironov, Andrey A ; Medvedeva, Yulia ; Cope, Leslie M ; Mularoni, Loris ; Favorov, Alexander. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002529.

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352017A machine learning approach for predicting CRISPR-Cas9 cleavage efficiencies and patterns underlying its mechanism of action. (2017). Mayrose, Itay ; Amar, David ; Yan, Winston X ; Abadi, Shiran. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005807.

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362019Accuracy of real-time multi-model ensemble forecasts for seasonal influenza in the U.S.. (2019). Crawford-Crudell, Willow ; Brooks, Logan C ; Kandula, Sasikiran ; Osthus, Dave ; Shaman, Jeffrey ; Ray, Evan L ; Rosenfeld, Roni ; Tushar, Abhinav ; Johansson, Michael A ; Yamana, Teresa K ; Biggerstaff, Matthew ; McGowan, Craig J ; Silva, Rebecca ; Reich, Nicholas G ; Moore, Evan ; Gibson, Graham Casey. In: PLOS Computational Biology. RePEc:plo:pcbi00:1007486.

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372011Is My Network Module Preserved and Reproducible?. (2011). Horvath, Steve ; Oldham, Michael C ; Luo, Rui ; Langfelder, Peter. In: PLOS Computational Biology. RePEc:plo:pcbi00:1001057.

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382007Universally Sloppy Parameter Sensitivities in Systems Biology Models. (2007). Sethna, James P ; Myers, Christopher R ; Brown, Kevin S ; Casey, Fergal P ; Waterfall, Joshua J ; Gutenkunst, Ryan N. In: PLOS Computational Biology. RePEc:plo:pcbi00:0030189.

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392011The What and Where of Adding Channel Noise to the Hodgkin-Huxley Equations. (2011). Shea-Brown, Eric ; Goldwyn, Joshua H. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002247.

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402018Astrocytic Kir4.1 channels and gap junctions account for spontaneous epileptic seizure. (2018). Wu, Ying ; Yu, Yuguo ; Chen, Liang ; Li, Jiajia ; Du, Mengmeng. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005877.

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412018Community-based benchmarking improves spike rate inference from two-photon calcium imaging data. (2018). Stone, Jasmine ; Mineault, Patrick ; Ringach, Dario ; Turaga, Srinivas C ; Bethge, Matthias ; Machado, Timothy A ; Macke, Jakob H ; Tolias, Andreas S ; Bolte, Ben ; Speiser, Artur ; Theis, Lucas ; Harris, Kenneth D ; McColgan, Thomas ; Roson, Miroslav Roman ; Pachitariu, Marius ; Chenkov, Nikolay ; Euler, Thomas ; Paninski, Liam ; Deneux, Thomas ; Froudarakis, Emmanouil ; Friedrich, Johannes ; Freeman, Jeremy ; Reimer, Jacob ; Berens, Philipp ; Sofroniew, Nicolas J ; Gerhard, Stephan ; Rogerson, Luke E ; Rupprecht, Peter. In: PLOS Computational Biology. RePEc:plo:pcbi00:1006157.

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422021Generating functional protein variants with variational autoencoders. (2021). Bikard, David ; Chen, Arthur ; Couairon, Guillaume ; Baur, Sebastien ; Depardieu, Florence ; Hawkins-Hooker, Alex. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008736.

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432016Neural Population Dynamics during Reaching Are Better Explained by a Dynamical System than Representational Tuning. (2016). Scherberger, Hansjorg ; Dann, Benjamin ; Michaels, Jonathan A. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005175.

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442015Resting-State Temporal Synchronization Networks Emerge from Connectivity Topology and Heterogeneity. (2015). Corbetta, Maurizio ; Mantini, Dante ; Romani, Gian Luca ; Hagmann, Patric ; Deco, Gustavo ; Ponce-Alvarez, Adrian. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004100.

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452015TRANSIT - A Software Tool for Himar1 TnSeq Analysis. (2015). Ioerger, Thomas R ; Sassetti, Christopher ; Baker, Richard ; Ambadipudi, Chaitra ; Dejesus, Michael A. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004401.

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462011Simulated Epidemics in an Empirical Spatiotemporal Network of 50,185 Sexual Contacts. (2011). Rocha, Luis ; Holme, Petter ; Liljeros, Fredrik ; Luis , . In: PLOS Computational Biology. RePEc:plo:pcbi00:1001109.

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472020Systems biology informed deep learning for inferring parameters and hidden dynamics. (2020). Em, George ; Raissi, Maziar ; Lu, LU ; Yazdani, Alireza . In: PLOS Computational Biology. RePEc:plo:pcbi00:1007575.

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482021Adaptive social contact rates induce complex dynamics during epidemics. (2021). Feldman, Marcus W ; Ram, Yoav ; Bonds, Matthew H ; Jones, James H ; Arthur, Ronan F. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008639.

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492021Optimal timing of one-shot interventions for epidemic control. (2021). Miller, Joel C ; Kiss, Istvan Z ; di Lauro, Francesco. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008763.

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502014Evolution of All-or-None Strategies in Repeated Public Goods Dilemmas. (2014). Pinheiro, Flávio ; Pacheco, Jorge M ; Santos, Francisco C ; Vasconcelos, Vitor V. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003945.

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Citing documents used to compute impact factor: 59
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2023Intracellular tension sensor reveals mechanical anisotropy of the actin cytoskeleton. (2023). Murrell, Michael ; Calderwood, David A ; Schwartz, Martin A ; Huet-Calderwood, Clotilde ; Shang, Xingbo ; Muresan, Camelia ; Amiri, Sorosh. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-43612-5.

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2023.

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2023Where Do Mistakes Lead? A Survey of Games with Incompetent Players. (2023). Filar, Jerzy A ; Kleshnina, Maria ; Graham, Thomas. In: Dynamic Games and Applications. RePEc:spr:dyngam:v:13:y:2023:i:1:d:10.1007_s13235-022-00425-3.

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2023Action initiation and punishment learning differ from childhood to adolescence while reward learning remains stable. (2023). Dochnal, Roberta ; Lockwood, Patricia L ; Dikeos, Dimitris ; Brito, Stephane A ; Rogers, Jack C ; Freitag, Christine M ; Klein-Flugge, Miriam C ; Stadler, Christina ; Kohls, Gregor ; Popma, Arne ; Brazil, Inti A ; Konrad, Kerstin ; Pauli, Ruth ; Hervas, Amaia ; Herpertz-Dahlmann, Beate ; Fernandez-Rivas, Aranzazu ; Fairchild, Graeme. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-41124-w.

Full description at Econpapers || Download Growth phase estimation for abundant bacterial populations sampled longitudinally from human stool metagenomes. (2023). Gibbons, Sean M ; Baliga, Nitin S ; Valenzuela, Jacob J ; Wilson, James ; Diener, Christian ; Lim, Joe J. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-41424-1.

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2023.

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2023Brain-optimized deep neural network models of human visual areas learn non-hierarchical representations. (2023). Naselaris, Thomas ; Kay, Kendrick ; Wu, Yihan ; Allen, Emily J ; St-Yves, Ghislain. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-38674-4.

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2023Phylodynamic of SARS-CoV-2 during the second wave of COVID-19 in Peru. (2023). Rebello, Joao Renato ; Bouckaert, Remco ; Aguilar, Mauro Quiones ; Silva, Cinthy Jimenez ; Uribe, Carmen Sofia ; Arevalo, Santiago Justo. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-39216-8.

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2023Optimal strategies for coordinating infection control and socio-economic activities. (2023). Xiao, Yanni ; Li, Tangjuan. In: Mathematics and Computers in Simulation (MATCOM). RePEc:eee:matcom:v:207:y:2023:i:c:p:533-555.

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2023Combining probabilistic forecasts of COVID-19 mortality in the United States. (2023). Taylor, Kathryn S. In: European Journal of Operational Research. RePEc:eee:ejores:v:304:y:2023:i:1:p:25-41.

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2023Testing the predictive accuracy of COVID-19 forecasts. (2023). Paccagnini, Alessia ; Iacone, Fabrizio ; Coroneo, Laura ; Monteiro, Paulo Santos . In: International Journal of Forecasting. RePEc:eee:intfor:v:39:y:2023:i:2:p:606-622.

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2023Comparing trained and untrained probabilistic ensemble forecasts of COVID-19 cases and deaths in the United States. (2023). Cramer, Estee Y ; Bracher, Johannes ; Bosse, Nikos I ; Reich, Nicholas G ; Biggerstaff, Matthew ; Tibshirani, Ryan J ; Bien, Jacob ; Zorn, Martha ; Brooks, Logan C ; Wang, Yijin ; Ray, Evan L ; Rumack, Aaron ; Johansson, Michael A ; Gerding, Aaron ; Funk, Sebastian. In: International Journal of Forecasting. RePEc:eee:intfor:v:39:y:2023:i:3:p:1366-1383.

Full description at Econpapers || Download Forecast combinations: An over 50-year review. (2023). Li, Feng ; Kang, Yanfei ; Hyndman, Rob J ; Wang, Xiao Qian. In: International Journal of Forecasting. RePEc:eee:intfor:v:39:y:2023:i:4:p:1518-1547.

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2023Modeling adaptive forward-looking behavior in epidemics on networks. (2023). Tizzoni, Michele ; Starnini, Michele ; Nemati, Lorenzo Amir. In: Papers. RePEc:arx:papers:2301.04947.

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2023Built environment as interface: a relation-based framework for the intersections between built, biotic, social, and health processes during COVID-19 and beyond. (2023). Keyser, Vadim ; Howland, Hannah. In: Palgrave Communications. RePEc:pal:palcom:v:10:y:2023:i:1:d:10.1057_s41599-023-01735-6.

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2023A nonstop thrill ride from genes to the assembly of the T3SS injectisome. (2023). Namboodiri, Sharanya ; Fishov, Itzhak. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-37753-w.

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2023Mutant fixation in the presence of a natural enemy. (2023). Komarova, Natalia L ; Wodarz, Dominik. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-41787-5.

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2023Annotation of natural product compound families using molecular networking topology and structural similarity fingerprinting. (2023). Linington, Roger G ; Gray, Christopher A ; Jake, F P ; Santen, Jeffrey A ; McMann, Emily J ; Clark, Trevor N ; Morehouse, Nicholas J. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-022-35734-z.

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2023MS2Query: reliable and scalable MS2 mass spectra-based analogue search. (2023). , Justin ; Huber, Florian ; Jansen, Robert S ; Vermeir, Femke J ; Camuzeaux, Stephane ; Chekmeneva, Elena ; de Jonge, Niek F. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-37446-4.

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2023Latent generative landscapes as maps of functional diversity in protein sequence space. (2023). Morcos, Faruck ; Sinner, Claude ; Martin, Jonathan ; Ziegler, Cheyenne. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-37958-z.

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2023Cell-free biosynthesis combined with deep learning accelerates de novo-development of antimicrobial peptides. (2023). Adam, David ; Erb, Tobias J ; Spahn, Christoph ; Pandi, Amir ; Vazquez, Olalla ; Braun, Peter ; Hummer, Gerhard ; Foroughijabbari, Yeganeh ; Schmeck, Bernd ; Kushwaha, Manish ; Abendroth, Frank ; Bobkova, Elizaveta ; Jung, Anna Lena ; Klabunde, Bjorn ; Bertrams, Wilhelm ; Burt, Marie ; Buttlar, Heiner ; Schaefer, Stefan L ; Bode, Helge B ; Trinh, Van Tuan ; von Strandmann, Elke Pogge ; Zare, Amir ; Preusser, Christian. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-42434-9.

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2023Effectiveness of feedback control and the trade-off between death by COVID-19 and costs of countermeasures. (2023). Matsuda, Hiroyuki ; Watanabe, Akira. In: Health Care Management Science. RePEc:kap:hcarem:v:26:y:2023:i:1:d:10.1007_s10729-022-09617-0.

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2023Analysis of a hybrid SIR model combining the fixed-moments pulse interventions with susceptibles-triggered threshold policy. (2023). Xiao, Yanni ; Li, Qian. In: Applied Mathematics and Computation. RePEc:eee:apmaco:v:453:y:2023:i:c:s0096300323002515.

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2023Autoencoder neural networks enable low dimensional structure analyses of microbial growth dynamics. (2023). You, Lingchong ; Xu, Helen ; Ma, Helena R ; Baig, Yasa. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-43455-0.

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2023Treatment Performance of Municipal Sewage in a Submerged Membrane Bioreactor (SMBR) and Mechanism of Biochar to Reduce Membrane Fouling. (2023). Guo, Junyuan ; Jiang, Jianying. In: Sustainability. RePEc:gam:jsusta:v:15:y:2023:i:12:p:9239-:d:1166019.

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2023The integration of hierarchical levels of scale in tree species distribution models of silver fir (Abies alba Mill.) and European beech (Fagus sylvatica L.) in mountain forests. (2023). Wallentin, Gudrun ; Katzensteiner, Klaus ; Simon, Alois. In: Ecological Modelling. RePEc:eee:ecomod:v:485:y:2023:i:c:s0304380023002296.

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2023Modeling Eye Movements During Decision Making: A Review. (2023). Lans, Ralf ; Pieters, Rik ; Wedel, Michel. In: Psychometrika. RePEc:spr:psycho:v:88:y:2023:i:2:d:10.1007_s11336-022-09876-4.

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2023IMC-Denoise: a content aware denoising pipeline to enhance Imaging Mass Cytometry. (2023). Brennen, Nathaniel W ; Pachynski, Russell K ; Shim, Kevin G ; Ruzinova, Marianna B ; Bender, Diane E ; Oetjen, Karolyn A ; Lu, Peng ; Link, Daniel C ; Oh, Stephen T. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-37123-6.

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2023CellSighter: a neural network to classify cells in highly multiplexed images. (2023). Keren, Leeat ; Milo, Idan ; Bagon, Shai ; Feinstein, Ben ; Bussi, Yuval ; Amitay, Yael. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-40066-7.

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2023Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering. (2023). Mrdjen, Dunja ; Leow, Ke Xuan ; McCaffrey, Erin F ; Kong, Alex ; Greenwald, Noah F ; Liu, Candace C ; Angelo, Michael ; Varra, Sricharan Reddy ; Rumberger, Josef Lorenz ; Cannon, Bryan J. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-40068-5.

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2023Single-cell spatial metabolomics with cell-type specific protein profiling for tissue systems biology. (2023). Coskun, Ahmet F ; Beyaz, Semir ; Afkarian, Maryam ; Ievlev, Anton V ; Garipcan, Aybuke ; Yueh, Brian ; Henderson, Walter ; Cai, Shuangyi ; Allam, Mayar ; Hu, Thomas. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-43917-5.

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2023Cost-effective fault diagnosis of nearby photovoltaic systems using graph neural networks. (2023). Develder, Chris ; Spina, Domenico ; van Gompel, Jonas. In: Energy. RePEc:eee:energy:v:266:y:2023:i:c:s0360544222033308.

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2023The dichotomous role of anisotropic sensing in pattern generation and disruption. (2023). Nava-Sedeo, Josue Manik ; del Sol, Maria ; Deutsch, Andreas. In: Physica A: Statistical Mechanics and its Applications. RePEc:eee:phsmap:v:630:y:2023:i:c:s0378437123008166.

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2023Hopf bifurcation mechanism analysis in an improved cortex-basal ganglia network with distributed delays: An application to Parkinson’s disease. (2023). Xu, Minbo ; Zhou, Weiting ; Hu, Bing ; Wang, Zhizhi. In: Chaos, Solitons & Fractals. RePEc:eee:chsofr:v:166:y:2023:i:c:s0960077922012012.

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2023Contribution of pks+ E. coli mutations to colorectal carcinogenesis. (2023). Sottoriva, Andrea ; Graham, Trevor A ; Magnani, Luca ; James, Chela ; Fernandez-Mateos, Javier ; Spiteri, Inmaculada ; Heide, Timon ; Ramazzotti, Daniele ; Chen, Bingjie. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-43329-5.

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2023Using drivers and transmission pathways to identify SARS-like coronavirus spillover risk hotspots. (2023). Wilkinson, David A ; Muylaert, Renata L ; Alviola, Phillip ; John, Reju Sam ; Galli, Nikolas ; Rulli, Maria Cristina ; Dodorico, Paolo ; Kingston, Tigga. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-42627-2.

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2023Scalable Inverse Uncertainty Quantification by Hierarchical Bayesian Modeling and Variational Inference. (2023). Kozlowski, Tomasz ; Xie, Ziyu ; Wu, XU ; Wang, Chen. In: Energies. RePEc:gam:jeners:v:16:y:2023:i:22:p:7664-:d:1283648.

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2023The gut microbiome and early-life growth in a population with high prevalence of stunting. (2023). Humphrey, Jean H ; Baharmand, Iman ; Stoltzfus, Rebecca J ; Geum, Hyun Min ; Tome, Joice ; Evans, Ceri ; Francis, Freddy ; Gough, Ethan K ; Mutasa, Batsirai ; Tavengwa, Naume V ; Carr, Lynnea ; Majo, Florence D ; Edens, Thaddeus J ; Chasekwa, Bernard ; Robertson, Ruairi C ; Smith, Laura E ; Manges, Amee R ; Ntozini, Robert ; Prendergast, Andrew J ; Gill, Sandeep K. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-36135-6.

Full description at Econpapers || Download Gut microbiota alters host bile acid metabolism to contribute to intrahepatic cholestasis of pregnancy. (2023). Yang, Min ; Wang, Sumin ; Li, Pan ; He, Jialin ; Chen, Xia ; Liu, Shuang ; Ouyang, Qin ; Hu, Hua ; Tang, LI ; Tu, Dianji ; Lei, Yuanyuan ; Zhang, Longhui. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-36981-4.

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2023Altered human gut virome in patients undergoing antibiotics therapy for Helicobacter pylori. (2023). Leung, Wai K ; Yi, Suet ; Lau, Kam Shing ; Morgan, Daniel C ; Yao, Haobin ; Wang, Lingling. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-37975-y.

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2023Gut microbiome dysbiosis across early Parkinson’s disease, REM sleep behavior disorder and their first-degree relatives. (2023). Chen, Zigui ; Yeoh, Yun Kit ; Wing, Yun Kwok ; Zhang, Jihui ; Trenkwalder, Claudia ; Ma, Suk Ling ; Wang, Jing ; Lai, Hei Ming ; To, Ka Fai ; Liu, Yaping ; Wong, Sunny Hei ; Huang, Bei ; Zhou, LI. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-38248-4.

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2023Host-diet-gut microbiome interactions influence human energy balance: a randomized clinical trial. (2023). Pratley, Richard E ; Davis, Taylor L ; Marcus, Andrew ; Yi, Fanchao ; Igudesman, Daria ; Dirks, Blake ; Carnero, Elvis A ; Corbin, Karen D ; Smith, Steven R ; Krajmalnik-Brown, Rosa ; Rittmann, Bruce E. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-38778-x.

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2023Delayed gut microbiota maturation in the first year of life is a hallmark of pediatric allergic disease. (2023). Finlay, Brett B ; Mandhane, Piushkumar J ; Moraes, Theo J ; Becker, Allan B ; Bel, Kate L ; Turvey, Stuart E ; Petersen, Charisse ; Hoskinson, Courtney ; Subbarao, Padmaja ; Azad, Meghan B ; Kozyrskyj, Anita L ; Simons, Elinor. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-40336-4.

Full description at Econpapers || Download Mutual modulation of gut microbiota and the immune system in type 1 diabetes models. (2023). Serrano-Gomez, Gerard ; Panosa, Anais ; Cosovanu, Catalina ; Arpa, Berta ; Egia-Mendikute, Leire ; Varela, Encarna ; Yaez, Francisca ; Corral-Pujol, Marta ; Manichanh, Chaysavanh ; Santiago, Alba ; Verdaguer, Joan ; Rosell-Mases, Estela ; Mora, Conchi. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-43652-x.

Full description at Econpapers || Download Sampling-based Bayesian inference in recurrent circuits of stochastic spiking neurons. (2023). Wu, SI ; Zhang, Wen-Hao ; Doiron, Brent ; Josi, Kreimir. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-41743-3.

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2023An integrated chance constraints approach for optimal vaccination strategies under uncertainty for COVID-19. (2023). Ntaimo, Lewis ; Gujjula, Krishna Reddy ; Gong, Jiangyue. In: Socio-Economic Planning Sciences. RePEc:eee:soceps:v:87:y:2023:i:pa:s0038012123000472.

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2023High monoclonal neutralization titers reduced breakthrough HIV-1 viral loads in the Antibody Mediated Prevention trials. (2023). Montefiori, David C ; Sobieszczyk, Magdalena E ; Seaton, Kelly E ; Gilbert, Peter B ; Casapia, Martin ; Mullins, James I ; Juraska, Michal ; Goepfert, Paul A ; Williamson, Carolyn ; Magaret, Craig A ; Orrell, Catherine ; Mkhize, Nonhlanhla N ; Carpp, Lindsay N ; Naidoo, Logashvari ; Morris, Lynn ; Zhang, BO ; Corey, Lawrence ; Edlefsen, Paul ; Huang, Yunda ; Cohen, Myron S ; Rossenkhan, Raabya ; Decamp, Allan C ; Ledgerwood, Julie E ; Schiffer, Joshua T ; Mayer, Bryan T ; Mgodi, Nyaradzo ; Cardozo-Ojeda, Fabian E ; Edupuganti, Srilatha ; Reeves, Daniel B ; Andrew, Philip ; Bar, Katharine J ; Karuna, Shelly T ; Tomaras, Georgia D. In: Nature Co
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2022Spatial dynamics of a fractional predator-prey system with time delay and Allee effect. (2022). Ouyang, Miao ; Liu, Shutang ; Bi, Zhimin. In: Chaos, Solitons & Fractals. RePEc:eee:chsofr:v:162:y:2022:i:c:s0960077922006440.

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2022.

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2022Tracking changes in SARS-CoV-2 transmission with a novel outpatient sentinel surveillance system in Chicago, USA. (2022). Pacilli, Massimo ; Ghinai, Isaac ; Cobey, Sarah ; Lightner, Shannon ; Gerardin, Jaline ; Holden, Tobias M ; Arevalo, Philip ; Jorgensen, Emile ; Richardson, Reese ; Gostic, Katelyn M. In: Nature Communications. RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-33317-6.

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Recent citations received in 2021
YearCiting document
2021A spline-based time-varying reproduction number for modelling epidemiological outbreaks. (2021). Pircalabelu, Eugen. In: LIDAM Discussion Papers ISBA. RePEc:aiz:louvad:2021030.

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2021Media discourses about a superspreader destination: How mismanagement of Covid-19 triggers debates about sustainability and geopolitics. (2021). Peters, Mike ; Pikkemaat, Birgit ; Bichler, Bernhard Fabian ; Mayer, Marius. In: Annals of Tourism Research. RePEc:eee:anture:v:91:y:2021:i:c:s0160738321001560.

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2021.

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2021.

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2021Quantifying previous SARS-CoV-2 infection through mixture modelling of antibody levels. (2021). Agweyu, A ; Bottomley, C ; I. M. O. Adetifa, ; Nyagwange, J ; Karanja, H ; Gitonga, J ; Mugo, D ; Etyang, A O ; Kagucia, E W ; J. A. G. Scott, ; Gallagher, K ; Warimwe, G M ; Uyoga, S ; Nokes, D J ; Otiende, M. In: Nature Communications. RePEc:nat:natcom:v:12:y:2021:i:1:d:10.1038_s41467-021-26452-z.

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2021The generative capacity of probabilistic protein sequence models. (2021). McGee, Francisco ; Haldane, Allan ; Carnevale, Vincenzo ; Levy, Ronald M ; Vucetic, Slobodan ; Novinger, Quentin ; Hauri, Sandro. In: Nature Communications. RePEc:nat:natcom:v:12:y:2021:i:1:d:10.1038_s41467-021-26529-9.

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2021scCODA is a Bayesian model for compositional single-cell data analysis. (2021). Schubert, B ; Theis, F J ; Muller, C L ; Ostner, J ; Buttner, M. In: Nature Communications. RePEc:nat:natcom:v:12:y:2021:i:1:d:10.1038_s41467-021-27150-6.

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2021Perceptions of risk for COVID-19 among individuals with chronic diseases and stakeholders in Central Appalachia. (2021). Awasthi, Manul ; Stewart, David W ; Dowling-McClay, Karilynn ; Weierbach, Florence M ; Mamudu, Hadii M ; Ahuja, Manik ; Paul, Timir K. In: Palgrave Communications. RePEc:pal:palcom:v:8:y:2021:i:1:d:10.1057_s41599-021-00906-7.

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2021Cluster size distribution of cells disseminating from a primary tumor. (2021). Levine, Herbert ; Mukherjee, Mrinmoy. In: PLOS Computational Biology. RePEc:plo:pcbi00:1009011.

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2021Novelty is not surprise: Human exploratory and adaptive behavior in sequential decision-making. (2021). Herzog, Michael H ; Gerstner, Wulfram ; Lehmann, Marco P ; Modirshanechi, Alireza ; Xu, He A. In: PLOS Computational Biology. RePEc:plo:pcbi00:1009070.

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2021Phenotypic-dependent variability and the emergence of tolerance in bacterial populations. (2021). Muoz, Miguel A ; Sireci, Matteo ; Mateu, Jose Camacho. In: PLOS Computational Biology. RePEc:plo:pcbi00:1009417.

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2021The role of competition versus cooperation in microbial community coalescence. (2021). Pawar, Samraat ; Smith, Thomas P ; Cook, Jacob ; Clegg, Tom ; Lechon-Alonso, Pablo. In: PLOS Computational Biology. RePEc:plo:pcbi00:1009584.

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2021Strategie di governo e strutture egemoniche in tempo di pandemia. (2021). Bellanca, Nicolo', . In: MPRA Paper. RePEc:pra:mprapa:111234.

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Recent citations received in 2020
YearCiting document
2020Socioeconomic Network Heterogeneity and Pandemic Policy Response. (2020). Cook, Cody ; Akbarpour, Mohammad ; Yang, Hanbin ; Vasserman, Shoshana ; Tebaldi, Pietro ; Saccarola, Matteo ; Nagaraj, Abhishek ; Mongey, Simon ; Marzuoli, Aude. In: Working Papers. RePEc:bfi:wpaper:2020-75.

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2020Disentangling the biotic and abiotic drivers of emergent migratory behavior using individual-based models. (2020). Fiechter, Jerome ; Bograd, Steven J ; Abrahms, Briana ; Dodson, Stephanie ; Hazen, Elliott L. In: Ecological Modelling. RePEc:eee:ecomod:v:432:y:2020:i:c:s0304380020302957.

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2020.

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2020Socioeconomic Network Heterogeneity and Pandemic Policy Response. (2020). Vasserman, Shoshana ; Tebaldi, Pietro ; Mongey, Simon ; Marzuoli, Aude ; Cook, Cody ; Akbarpour, Mohammad ; Yang, Hanbin ; Saccarola, Matteo ; Nagaraj, Abhishek. In: NBER Working Papers. RePEc:nbr:nberwo:27374.

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2020Limits on amplifiers of natural selection under death-Birth updating. (2020). Nowak, Martin A ; Chatterjee, Krishnendu ; Pavlogiannis, Andreas ; Tkadlec, Josef. In: PLOS Computational Biology. RePEc:plo:pcbi00:1007494.

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2020Transient amplifiers of selection and reducers of fixation for death-Birth updating on graphs. (2020). Lippner, Gabor ; Parke, Darren ; Kolodny, Joshua ; Brizuela, Lori ; Steinhagen, Patricia ; Withers, James ; Jencks, Robert ; Sample, Christine ; Allen, Benjamin ; Dementieva, Yulia A. In: PLOS Computational Biology. RePEc:plo:pcbi00:1007529.

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2020Time varying methods to infer extremes in dengue transmission dynamics. (2020). Cook, Alex R ; Ng, Lee Ching ; Lee, Borame Sue ; Han, Yi Ting ; Lim, Jue Tao. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008279.

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2020The Moran process on 2-chromatic graphs. (2020). Nowak, Martin A ; Chatterjee, Krishnendu ; McAvoy, Alex ; Kaveh, Kamran. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008402.

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2020Ten simple rules for starting research in your late teens. (2020). Bourne, Philip E ; Chalupa, Jack ; Newbury, Abigail M ; Mura, Cameron. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008403.

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2020Modeling habitat connectivity in support of multiobjective species movement: An application to amphibian habitat systems. (2020). Trauth, Kathleen M ; Gholamialam, Ashkan ; Matisziw, Timothy C. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008540.

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2020Impact of sars-cov-2 interventions on dengue transmission. (2020). Cook, Alex R ; Ng, Lee Ching ; Aik, Joel ; Koo, Joel Ruihan ; Li, Esther ; Xiong, Lawrence Zheng ; Lee, Borame Sue ; Lim, Jue Tao. In: PLOS Neglected Tropical Diseases. RePEc:plo:pntd00:0008719.

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2020Two-step multi-omics modelling of drug sensitivity in cancer cell lines to identify driving mechanisms. (2020). Schuppert, Andreas ; Kusch, Nina. In: PLOS ONE. RePEc:plo:pone00:0238961.

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2020Directionally dependent multi-view clustering using copula model. (2020). Mallick, Bani K ; Lee, Se Yoon ; Souris, Allyson ; Karimi, Mostafa ; Iquebal, Ashif S ; Afrin, Kahkashan. In: PLOS ONE. RePEc:plo:pone00:0238996.

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2020Societal and economic factors associated with COVID-19 indicate that developing countries could suffer the most. (2020). Foster, Kathleen Lois ; Selvitella, Alessandro Maria. In: Technium Social Sciences Journal. RePEc:tec:journl:v:10:y:2020:i:1:p:637-644.

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