[Raw data] [50 most cited papers] [50 most relevant papers] [cites used to compute IF] [Recent citations ][Frequent citing series ] [more data in EconPapers] [trace new citations] [Missing citations? Add them now] [Incorrect content? Let us know]
IF | AIF | CIF | IF5 | DOC | CDO | CIT | NCI | CCU | D2Y | C2Y | D5Y | C5Y | SC | %SC | CiY | II | AII | |
2005 | 0 | 0.51 | 0 | 0 | 13 | 13 | 36 | 1 | 0 | 0 | 0 | 0 | 0.24 | |||||
2006 | 0.38 | 0.51 | 0.14 | 0.38 | 38 | 51 | 188 | 7 | 8 | 13 | 5 | 13 | 5 | 7 | 100 | 2 | 0.05 | 0.23 |
2007 | 0.25 | 0.46 | 0.23 | 0.25 | 64 | 115 | 198 | 26 | 34 | 51 | 13 | 51 | 13 | 23 | 88.5 | 3 | 0.05 | 0.2 |
2008 | 0.23 | 0.49 | 0.14 | 0.21 | 90 | 205 | 224 | 29 | 63 | 102 | 23 | 115 | 24 | 18 | 62.1 | 2 | 0.02 | 0.23 |
2009 | 0.16 | 0.48 | 0.13 | 0.15 | 102 | 307 | 292 | 41 | 104 | 154 | 24 | 205 | 31 | 28 | 68.3 | 3 | 0.03 | 0.24 |
2010 | 0.2 | 0.49 | 0.16 | 0.17 | 119 | 426 | 480 | 69 | 173 | 192 | 38 | 307 | 53 | 43 | 62.3 | 3 | 0.03 | 0.21 |
2011 | 0.2 | 0.52 | 0.19 | 0.2 | 128 | 554 | 363 | 106 | 279 | 221 | 45 | 413 | 83 | 44 | 41.5 | 7 | 0.05 | 0.24 |
2012 | 0.25 | 0.52 | 0.23 | 0.23 | 142 | 696 | 247 | 163 | 442 | 247 | 62 | 503 | 117 | 65 | 39.9 | 8 | 0.06 | 0.22 |
2013 | 0.21 | 0.56 | 0.25 | 0.25 | 161 | 857 | 337 | 216 | 658 | 270 | 56 | 581 | 147 | 89 | 41.2 | 7 | 0.04 | 0.24 |
2014 | 0.14 | 0.55 | 0.2 | 0.19 | 196 | 1053 | 379 | 209 | 867 | 303 | 42 | 652 | 123 | 116 | 55.5 | 6 | 0.03 | 0.23 |
2015 | 0.17 | 0.55 | 0.19 | 0.17 | 208 | 1261 | 463 | 242 | 1109 | 357 | 60 | 746 | 127 | 134 | 55.4 | 6 | 0.03 | 0.23 |
2016 | 0.16 | 0.53 | 0.17 | 0.14 | 187 | 1448 | 293 | 246 | 1355 | 404 | 63 | 835 | 113 | 146 | 59.3 | 10 | 0.05 | 0.21 |
2017 | 0.17 | 0.54 | 0.19 | 0.16 | 213 | 1661 | 318 | 316 | 1671 | 395 | 68 | 894 | 142 | 192 | 60.8 | 7 | 0.03 | 0.22 |
2018 | 0.13 | 0.55 | 0.15 | 0.14 | 182 | 1843 | 202 | 275 | 1946 | 400 | 53 | 965 | 136 | 116 | 42.2 | 4 | 0.02 | 0.24 |
2019 | 0.17 | 0.57 | 0.19 | 0.17 | 240 | 2083 | 163 | 390 | 2336 | 395 | 69 | 986 | 164 | 231 | 59.2 | 7 | 0.03 | 0.23 |
2020 | 0.13 | 0.68 | 0.18 | 0.15 | 285 | 2368 | 190 | 430 | 2766 | 422 | 53 | 1030 | 159 | 195 | 45.3 | 18 | 0.06 | 0.32 |
2021 | 0.14 | 0.81 | 0.16 | 0.15 | 342 | 2710 | 164 | 432 | 3198 | 525 | 74 | 1107 | 168 | 100 | 23.1 | 14 | 0.04 | 0.3 |
2022 | 0.14 | 0.86 | 0.2 | 0.16 | 78 | 2788 | 9 | 552 | 3750 | 627 | 87 | 1262 | 208 | 11 | 2 | 3 | 0.04 | 0.26 |
IF: | Two years Impact Factor: C2Y / D2Y |
AIF: | Average Impact Factor for all series in RePEc in year y |
CIF: | Cumulative impact factor |
IF5: | Five years Impact Factor: C5Y / D5Y |
DOC: | Number of documents published in year y |
CDO: | Cumulative number of documents published until year y |
CIT: | Number of citations to papers published in year y |
NCI: | Number of citations in year y |
CCU: | Cumulative number of citations to papers published until year y |
D2Y: | Number of articles published in y-1 plus y-2 |
C2Y: | Cites in y to articles published in y-1 plus y-2 |
D5Y: | Number of articles published in y-1 until y-5 |
C5Y: | Cites in y to articles published in y-1 until y-5 |
SC: | selft citations in y to articles published in y-1 plus y-2 |
%SC: | Percentage of selft citations in y to articles published in y-1 plus y-2 |
CiY: | Cites in year y to documents published in year y |
II: | Immediacy Index: CiY / Documents. |
AII: | Average Immediacy Index for series in RePEc in year y |
# | Year | Title | Cited |
---|---|---|---|
1 | 2010 | Evolutionary Establishment of Moral and Double Moral Standards through Spatial Interactions. (2010). Szabo, Gyorgy ; Perc, Matja ; Szolnoki, Attila ; Helbing, Dirk. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000758. Full description at Econpapers || Download paper | 90 |
2 | 2006 | Cooperation Prevails When Individuals Adjust Their Social Ties. (2006). Lenaerts, Tom ; Pacheco, Jorge M ; Santos, Francisco C. In: PLOS Computational Biology. RePEc:plo:pcbi00:0020140. Full description at Econpapers || Download paper | 85 |
3 | 2013 | Software for Computing and Annotating Genomic Ranges. (2013). Carey, Vincent J ; Morgan, Martin T ; Gentleman, Robert ; Carlson, Marc ; Aboyoun, Patrick ; Pages, Herve ; Huber, Wolfgang ; Lawrence, Michael. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003118. Full description at Econpapers || Download paper | 80 |
4 | 2010 | Game Theory of Social Distancing in Response to an Epidemic. (2010). Reluga, Timothy C. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000793. Full description at Econpapers || Download paper | 56 |
5 | 2015 | MAGMA: Generalized Gene-Set Analysis of GWAS Data. (2015). Posthuma, Danielle ; Heskes, Tom ; Mooij, Joris M ; de Leeuw, Christiaan A. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004219. Full description at Econpapers || Download paper | 55 |
6 | 2010 | Dynamics and Control of Diseases in Networks with Community Structure. (2010). Jones, James H ; Salathe, Marcel. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000736. Full description at Econpapers || Download paper | 52 |
7 | 2018 | Punishment and inspection for governing the commons in a feedback-evolving game. (2018). Szolnoki, Attila ; Chen, Xiaojie. In: PLOS Computational Biology. RePEc:plo:pcbi00:1006347. Full description at Econpapers || Download paper | 50 |
8 | 2007 | Universally Sloppy Parameter Sensitivities in Systems Biology Models. (2007). Sethna, James P ; Myers, Christopher R ; Brown, Kevin S ; Casey, Fergal P ; Waterfall, Joshua J ; Gutenkunst, Ryan N. In: PLOS Computational Biology. RePEc:plo:pcbi00:0030189. Full description at Econpapers || Download paper | 42 |
9 | 2017 | OpenMM 7: Rapid development of high performance algorithms for molecular dynamics. (2017). Harrigan, Matthew P ; Simmonett, Andrew C ; Wang, Lee-Ping ; Beauchamp, Kyle A ; Zhao, Yutong ; McGibbon, Robert T ; Chodera, John D ; Pande, Vijay S ; Swails, Jason ; Brooks, Bernard R ; Eastman, Peter ; Wiewiora, Rafal P ; Stern, Chaya D. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005659. Full description at Econpapers || Download paper | 40 |
10 | 2012 | Evolutionary Game Theory and Social Learning Can Determine How Vaccine Scares Unfold. (2012). Bhattacharyya, Samit ; Bauch, Chris T. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002452. Full description at Econpapers || Download paper | 35 |
11 | 2015 | Sparse and Compositionally Robust Inference of Microbial Ecological Networks. (2015). Bonneau, Richard A ; Blaser, Martin J ; Littman, Dan R ; Miraldi, Emily R ; Muller, Christian L ; Kurtz, Zachary D. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004226. Full description at Econpapers || Download paper | 30 |
12 | 2020 | Practical considerations for measuring the effective reproductive number, Rt. (2020). Bonhoeffer, Sebastian ; Hay, James A ; Scire, Jeremie ; Niehus, Rene ; Huisman, Jana S ; Kahn, Rebecca ; White, Laura F ; Tedijanto, Christine ; Thompson, Robin N ; Joshi, Keya ; Sherrat, Katharine ; Abbott, Sam ; Cobey, Sarah ; Bosse, Nikos I ; Baskerville, Edward B ; Lipsitch, Marc ; Munday, James D ; McGough, Lauren ; Funk, Sebastian ; Meakin, Sophie ; Gostic, Katelyn M ; Wallinga, Jacco ; Hellewell, Joel ; Stadler, Tanja ; de Salazar, Pablo M. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008409. Full description at Econpapers || Download Approximate Bayesian Computation. (2013). Dessimoz, Christophe ; Foll, Matthieu ; Corander, Jukka ; Numminen, Elina ; Busetto, Alberto Giovanni ; Sunnker, Mikael. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002803. Full description at Econpapers || Download paper | 27 |
14 | 2014 | Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible. (2014). Holmes, Susan ; McMurdie, Paul J. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003531. Full description at Econpapers || Download paper | 26 |
15 | 2021 | Multivariable association discovery in population-scale meta-omics studies. (2021). Huttenhower, Curtis ; Ren, Boyu ; Bravo, Hector Corrada ; Weingart, George ; Franzosa, Eric A ; Tickle, Timothy L ; Paulson, Joseph N ; Nguyen, Long H ; Waldron, Levi ; Zhang, Yancong ; Lu, Yiren ; Ma, Siyuan ; Subramanian, Ayshwarya ; McIver, Lauren J ; Wilkinson, Jeremy E ; Rahnavard, Ali ; Thompson, Kelsey N ; Mallick, Himel ; Chatterjee, Suvo ; Schwager, Emma H. In: PLOS Computational Biology. RePEc:plo:pcbi00:1009442. Full description at Econpapers || Download Mitigation Strategies for Pandemic Influenza A: Balancing Conflicting Policy Objectives. (2011). Anderson, Roy M ; Heesterbeek, Hans ; Klinkenberg, Don ; Hollingsworth, Deirdre T. In: PLOS Computational Biology. RePEc:plo:pcbi00:1001076. Full description at Econpapers || Download paper | 24 |
17 | 2011 | Accelerated Profile HMM Searches. (2011). Eddy, Sean R. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002195. Full description at Econpapers || Download paper | 23 |
18 | 2014 | VBA: A Probabilistic Treatment of Nonlinear Models for Neurobiological and Behavioural Data. (2014). Rigoux, Lionel ; Adam, Vincent ; Daunizeau, Jean. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003441. Full description at Econpapers || Download paper | 23 |
19 | 2009 | Semantic Similarity in Biomedical Ontologies. (2009). Couto, Francisco M ; Lord, Phillip ; Falco, Andre O ; Faria, Daniel ; Pesquita, Catia. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000443. Full description at Econpapers || Download paper | 23 |
20 | 2009 | Broadband Criticality of Human Brain Network Synchronization. (2009). Bullmore, ED ; Christensen, Soren R ; Smith, Marie L ; Kitzbichler, Manfred G. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000314. Full description at Econpapers || Download paper | 22 |
21 | 2014 | Evolutionary Game Dynamics in Populations with Heterogenous Structures. (2014). Hauert, Christoph ; Fu, Feng ; Maciejewski, Wes. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003567. Full description at Econpapers || Download paper | 21 |
22 | 2017 | Fast online deconvolution of calcium imaging data. (2017). Paninski, Liam ; Zhou, Pengcheng ; Friedrich, Johannes. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005423. Full description at Econpapers || Download paper | 20 |
23 | 2009 | Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples. (2009). Pop, Mihai ; Nagarajan, Niranjan ; White, James Robert. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000352. Full description at Econpapers || Download paper | 20 |
24 | 2014 | A Toolbox for Representational Similarity Analysis. (2014). Kriegeskorte, Nikolaus ; Marslen-Wilson, William ; Su, LI ; Walther, Alexander ; Wingfield, Cai ; Nili, Hamed. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003553. Full description at Econpapers || Download paper | 20 |
25 | 2011 | How Structure Determines Correlations in Neuronal Networks. (2011). Rotter, Stefan ; Cardanobile, Stefano ; Staude, Benjamin ; Pernice, Volker. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002059. Full description at Econpapers || Download paper | 19 |
26 | 2010 | Comparing Families of Dynamic Causal Models. (2010). Leff, Alex P ; Schofield, Thomas M ; Friston, Karl J ; Rosa, Maria J ; Daunizeau, Jean ; Stephan, Klaas E ; Penny, Will D. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000709. Full description at Econpapers || Download paper | 18 |
27 | 2010 | Associating Genes and Protein Complexes with Disease via Network Propagation. (2010). Sharan, Roded ; Shlomi, Tomer ; Ruppin, Eytan ; Magger, Oded ; Vanunu, Oron. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000641. Full description at Econpapers || Download paper | 18 |
28 | 2009 | Population Structure Induces a Symmetry Breaking Favoring the Emergence of Cooperation. (2009). Pinheiro, Flávio ; Santos, Francisco C ; Pacheco, Jorge M. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000596. Full description at Econpapers || Download paper | 18 |
29 | 2015 | VDJtools: Unifying Post-analysis of T Cell Receptor Repertoires. (2015). Zvyagin, Ivan V ; Nazarov, Vadim I ; Pogorelyy, Mikhail V ; Putintseva, Ekaterina V ; Britanova, Olga V ; Bolotin, Dmitriy A ; Turchaninova, Maria A ; Chudakov, Dmitriy M ; Bagaev, Dmitriy V ; Skorobogatova, Elena V ; Shugay, Mikhail ; Kirgizov, Kirill I ; Kirgizova, Vitalina I. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004503. Full description at Econpapers || Download paper | 17 |
30 | 2007 | Machine Learning and Its Applications to Biology. (2007). Drghici, Sorin ; Romero, Roberto ; Chen, Xue-Wen ; Carey, Vincent J ; Tarca, Adi L. In: PLOS Computational Biology. RePEc:plo:pcbi00:0030116. Full description at Econpapers || Download paper | 17 |
31 | 2016 | Efficient Coalescent Simulation and Genealogical Analysis for Large Sample Sizes. (2016). McVean, Gilean ; Etheridge, Alison M ; Kelleher, Jerome. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004842. Full description at Econpapers || Download paper | 17 |
32 | 2006 | Nonoptimal Component Placement, but Short Processing Paths, due to Long-Distance Projections in Neural Systems. (2006). Hilgetag, Claus C ; Kaiser, Marcus . In: PLOS Computational Biology. RePEc:plo:pcbi00:0020095. Full description at Econpapers || Download paper | 16 |
33 | 2014 | Comparison of Filtering Methods for the Modeling and Retrospective Forecasting of Influenza Epidemics. (2014). Shaman, Jeffrey ; Karspeck, Alicia ; Yang, Wan. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003583. Full description at Econpapers || Download paper | 16 |
34 | 2014 | On the Origins of Suboptimality in Human Probabilistic Inference. (2014). Wolpert, Daniel M ; Vijayakumar, Sethu ; Acerbi, Luigi. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003661. Full description at Econpapers || Download paper | 16 |
35 | 2011 | Risk, Unexpected Uncertainty, and Estimation Uncertainty: Bayesian Learning in Unstable Settings. (2011). Bossaerts, Peter ; Payzan-Lenestour, Elise. In: PLOS Computational Biology. RePEc:plo:pcbi00:1001048. Full description at Econpapers || Download paper | 16 |
36 | 2017 | mixOmics: An R package for âomics feature selection and multiple data integration. (2017). le Cao, Kim-Anh ; Singh, Amrit ; Gautier, Benoit ; Rohart, Florian . In: PLOS Computational Biology. RePEc:plo:pcbi00:1005752. Full description at Econpapers || Download paper | 16 |
37 | 2008 | Support Vector Machines and Kernels for Computational Biology. (2008). Ratsch, Gunnar ; Scholkopf, Bernhard ; Sonnenburg, Soren ; Ong, Cheng Soon ; Ben-Hur, Asa. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000173. Full description at Econpapers || Download paper | 16 |
38 | 2010 | Parameter Estimation and Model Selection in Computational Biology. (2010). Khammash, Mustafa ; Lillacci, Gabriele. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000696. Full description at Econpapers || Download paper | 15 |
39 | 2008 | Hierarchical Models in the Brain. (2008). Friston, Karl. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000211. Full description at Econpapers || Download paper | 15 |
40 | 2010 | Probability Matching as a Computational Strategy Used in Perception. (2010). Shams, Ladan ; Beierholm, Ulrik R ; Wozny, David R. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000871. Full description at Econpapers || Download paper | 15 |
41 | 2016 | Reinforcement Learning Explains Conditional Cooperation and Its Moody Cousin. (2016). Masuda, Naoki ; Takezawa, Masanori ; Horita, Yutaka ; Ezaki, Takahiro. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005034. Full description at Econpapers || Download paper | 15 |
42 | 2010 | A Bayesian Framework to Account for Complex Non-Genetic Factors in Gene Expression Levels Greatly Increases Power in eQTL Studies. (2010). Winn, John ; Durbin, Richard ; Parts, Leopold ; Stegle, Oliver. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000770. Full description at Econpapers || Download paper | 15 |
43 | 2015 | Flexible Modeling of Epidemics with an Empirical Bayes Framework. (2015). Rosenfeld, Roni ; Tibshirani, Ryan J ; Hyun, Sangwon ; Farrow, David C ; Brooks, Logan C. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004382. Full description at Econpapers || Download paper | 14 |
44 | 2020 | Estimation of country-level basic reproductive ratios for novel Coronavirus (SARS-CoV-2/COVID-19) using synthetic contact matrices. (2020). Keeling, Matt J ; Hilton, Joe. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008031. Full description at Econpapers || Download paper | 14 |
45 | 2016 | MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data. (2016). Tappu, Rewati ; Ruscheweyh, Hans-Joachim ; Mitra, Suparna ; El-Hadidi, Mohamed ; Gorska, Anna ; Flade, Isabell ; Beier, Sina ; Huson, Daniel H. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004957. Full description at Econpapers || Download paper | 14 |
46 | 2005 | Ten Simple Rules for Getting Published. (2005). Bourne, Philip E. In: PLOS Computational Biology. RePEc:plo:pcbi00:0010057. Full description at Econpapers || Download paper | 14 |
47 | 2015 | Emergence of Shared Intentionality Is Coupled to the Advance of Cumulative Culture. (2015). Newton, Jonathan ; Angus, Simon. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004587. Full description at Econpapers || Download paper | 14 |
48 | 2016 | Evolution of Cooperation in Social Dilemmas on Complex Networks. (2016). Killingback, Timothy ; Iyer, Swami. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004779. Full description at Econpapers || Download paper | 13 |
49 | 2009 | Pairwise Maximum Entropy Models for Studying Large Biological Systems: When They Can Work and When They Cant. (2009). Latham, Peter E ; Nirenberg, Sheila ; Roudi, Yasser. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000380. Full description at Econpapers || Download paper | 13 |
50 | 2011 | Simulated Epidemics in an Empirical Spatiotemporal Network of 50,185 Sexual Contacts. (2011). Rocha, Luis ; Holme, Petter ; Liljeros, Fredrik ; Luis , . In: PLOS Computational Biology. RePEc:plo:pcbi00:1001109. Full description at Econpapers || Download paper | 13 |
# | Year | Title | Cited |
---|---|---|---|
1 | 2013 | Software for Computing and Annotating Genomic Ranges. (2013). Carey, Vincent J ; Morgan, Martin T ; Gentleman, Robert ; Carlson, Marc ; Aboyoun, Patrick ; Pages, Herve ; Huber, Wolfgang ; Lawrence, Michael. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003118. Full description at Econpapers || Download paper | 75 |
2 | 2015 | MAGMA: Generalized Gene-Set Analysis of GWAS Data. (2015). Posthuma, Danielle ; Heskes, Tom ; Mooij, Joris M ; de Leeuw, Christiaan A. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004219. Full description at Econpapers || Download paper | 47 |
3 | 2017 | OpenMM 7: Rapid development of high performance algorithms for molecular dynamics. (2017). Harrigan, Matthew P ; Simmonett, Andrew C ; Wang, Lee-Ping ; Beauchamp, Kyle A ; Zhao, Yutong ; McGibbon, Robert T ; Chodera, John D ; Pande, Vijay S ; Swails, Jason ; Brooks, Bernard R ; Eastman, Peter ; Wiewiora, Rafal P ; Stern, Chaya D. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005659. Full description at Econpapers || Download paper | 39 |
4 | 2010 | Evolutionary Establishment of Moral and Double Moral Standards through Spatial Interactions. (2010). Szabo, Gyorgy ; Perc, Matja ; Szolnoki, Attila ; Helbing, Dirk. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000758. Full description at Econpapers || Download paper | 36 |
5 | 2018 | Punishment and inspection for governing the commons in a feedback-evolving game. (2018). Szolnoki, Attila ; Chen, Xiaojie. In: PLOS Computational Biology. RePEc:plo:pcbi00:1006347. Full description at Econpapers || Download paper | 29 |
6 | 2021 | Multivariable association discovery in population-scale meta-omics studies. (2021). Huttenhower, Curtis ; Ren, Boyu ; Bravo, Hector Corrada ; Weingart, George ; Franzosa, Eric A ; Tickle, Timothy L ; Paulson, Joseph N ; Nguyen, Long H ; Waldron, Levi ; Zhang, Yancong ; Lu, Yiren ; Ma, Siyuan ; Subramanian, Ayshwarya ; McIver, Lauren J ; Wilkinson, Jeremy E ; Rahnavard, Ali ; Thompson, Kelsey N ; Mallick, Himel ; Chatterjee, Suvo ; Schwager, Emma H. In: PLOS Computational Biology. RePEc:plo:pcbi00:1009442. Full description at Econpapers || Download Game Theory of Social Distancing in Response to an Epidemic. (2010). Reluga, Timothy C. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000793. Full description at Econpapers || Download paper | 22 |
8 | 2020 | Practical considerations for measuring the effective reproductive number, Rt. (2020). Bonhoeffer, Sebastian ; Hay, James A ; Scire, Jeremie ; Niehus, Rene ; Huisman, Jana S ; Kahn, Rebecca ; White, Laura F ; Tedijanto, Christine ; Thompson, Robin N ; Joshi, Keya ; Sherrat, Katharine ; Abbott, Sam ; Cobey, Sarah ; Bosse, Nikos I ; Baskerville, Edward B ; Lipsitch, Marc ; Munday, James D ; McGough, Lauren ; Funk, Sebastian ; Meakin, Sophie ; Gostic, Katelyn M ; Wallinga, Jacco ; Hellewell, Joel ; Stadler, Tanja ; de Salazar, Pablo M. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008409. Full description at Econpapers || Download Cooperation Prevails When Individuals Adjust Their Social Ties. (2006). Lenaerts, Tom ; Pacheco, Jorge M ; Santos, Francisco C. In: PLOS Computational Biology. RePEc:plo:pcbi00:0020140. Full description at Econpapers || Download paper | 18 |
10 | 2015 | Sparse and Compositionally Robust Inference of Microbial Ecological Networks. (2015). Bonneau, Richard A ; Blaser, Martin J ; Littman, Dan R ; Miraldi, Emily R ; Muller, Christian L ; Kurtz, Zachary D. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004226. Full description at Econpapers || Download paper | 17 |
11 | 2012 | Evolutionary Game Theory and Social Learning Can Determine How Vaccine Scares Unfold. (2012). Bhattacharyya, Samit ; Bauch, Chris T. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002452. Full description at Econpapers || Download paper | 17 |
12 | 2017 | Fast online deconvolution of calcium imaging data. (2017). Paninski, Liam ; Zhou, Pengcheng ; Friedrich, Johannes. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005423. Full description at Econpapers || Download paper | 16 |
13 | 2015 | VDJtools: Unifying Post-analysis of T Cell Receptor Repertoires. (2015). Zvyagin, Ivan V ; Nazarov, Vadim I ; Pogorelyy, Mikhail V ; Putintseva, Ekaterina V ; Britanova, Olga V ; Bolotin, Dmitriy A ; Turchaninova, Maria A ; Chudakov, Dmitriy M ; Bagaev, Dmitriy V ; Skorobogatova, Elena V ; Shugay, Mikhail ; Kirgizov, Kirill I ; Kirgizova, Vitalina I. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004503. Full description at Econpapers || Download paper | 16 |
14 | 2017 | mixOmics: An R package for âomics feature selection and multiple data integration. (2017). le Cao, Kim-Anh ; Singh, Amrit ; Gautier, Benoit ; Rohart, Florian . In: PLOS Computational Biology. RePEc:plo:pcbi00:1005752. Full description at Econpapers || Download paper | 14 |
15 | 2016 | Efficient Coalescent Simulation and Genealogical Analysis for Large Sample Sizes. (2016). McVean, Gilean ; Etheridge, Alison M ; Kelleher, Jerome. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004842. Full description at Econpapers || Download paper | 12 |
16 | 2016 | Reinforcement Learning Explains Conditional Cooperation and Its Moody Cousin. (2016). Masuda, Naoki ; Takezawa, Masanori ; Horita, Yutaka ; Ezaki, Takahiro. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005034. Full description at Econpapers || Download paper | 11 |
17 | 2016 | MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data. (2016). Tappu, Rewati ; Ruscheweyh, Hans-Joachim ; Mitra, Suparna ; El-Hadidi, Mohamed ; Gorska, Anna ; Flade, Isabell ; Beier, Sina ; Huson, Daniel H. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004957. Full description at Econpapers || Download paper | 10 |
18 | 2021 | Evaluating epidemic forecasts in an interval format. (2021). Reich, Nicholas G ; Gneiting, Tilmann ; Ray, Evan L ; Bracher, Johannes. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008618. Full description at Econpapers || Download paper | 10 |
19 | 2014 | Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible. (2014). Holmes, Susan ; McMurdie, Paul J. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003531. Full description at Econpapers || Download paper | 10 |
20 | 2013 | Approximate Bayesian Computation. (2013). Dessimoz, Christophe ; Foll, Matthieu ; Corander, Jukka ; Numminen, Elina ; Busetto, Alberto Giovanni ; Sunnker, Mikael. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002803. Full description at Econpapers || Download paper | 10 |
21 | 2010 | A Bayesian Framework to Account for Complex Non-Genetic Factors in Gene Expression Levels Greatly Increases Power in eQTL Studies. (2010). Winn, John ; Durbin, Richard ; Parts, Leopold ; Stegle, Oliver. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000770. Full description at Econpapers || Download paper | 9 |
22 | 2017 | Mindboggling morphometry of human brains. (2017). Reuter, Martin ; Rossa, Brian ; Lee, Noah ; Stavsky, Eliezer ; Hame, Yrjo ; Giard, Joachim ; Bao, Forrest S ; Ghosh, Satrajit S ; Klein, Arno ; Keshavan, Anisha ; Neto, Elias Chaibub. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005350. Full description at Econpapers || Download paper | 9 |
23 | 2016 | Cytofkit: A Bioconductor Package for an Integrated Mass Cytometry Data Analysis Pipeline. (2016). Chan-Lau, Jorge ; Chen, Jin Miao ; Poidinger, Michael ; Newell, Evan W ; Wong, Michael Thomas. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005112. Full description at Econpapers || Download paper | 9 |
24 | 2010 | Dynamics and Control of Diseases in Networks with Community Structure. (2010). Jones, James H ; Salathe, Marcel. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000736. Full description at Econpapers || Download paper | 8 |
25 | 2014 | VBA: A Probabilistic Treatment of Nonlinear Models for Neurobiological and Behavioural Data. (2014). Rigoux, Lionel ; Adam, Vincent ; Daunizeau, Jean. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003441. Full description at Econpapers || Download paper | 8 |
26 | 2009 | Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples. (2009). Pop, Mihai ; Nagarajan, Niranjan ; White, James Robert. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000352. Full description at Econpapers || Download paper | 7 |
27 | 2015 | Asymmetric Evolutionary Games. (2015). Hauert, Christoph ; McAvoy, Alex. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004349. Full description at Econpapers || Download paper | 7 |
28 | 2014 | A Toolbox for Representational Similarity Analysis. (2014). Kriegeskorte, Nikolaus ; Marslen-Wilson, William ; Su, LI ; Walther, Alexander ; Wingfield, Cai ; Nili, Hamed. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003553. Full description at Econpapers || Download paper | 7 |
29 | 2016 | Machine Learning Meta-analysis of Large Metagenomic Datasets: Tools and Biological Insights. (2016). Segata, Nicola ; Waldron, Levi ; Malik, Faizan ; Truong, Duy Tin ; Pasolli, Edoardo. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004977. Full description at Econpapers || Download paper | 6 |
30 | 2021 | MAUI (MBI Analysis User Interface)âAn image processing pipeline for Multiplexed Mass Based Imaging. (2021). Keren, Leeat ; Angelo, Michael ; Mrdjen, Dunja ; Oliveria, John-Paul ; Greenbaum, Shirley ; Milo, Idan ; Baranski, Alex. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008887. Full description at Econpapers || Download paper | 6 |
31 | 2017 | ROTS: An R package for reproducibility-optimized statistical testing. (2017). Elo, Laura L ; Faux, Thomas ; Jaakkola, Maria K ; Seyednasrollah, Fatemeh ; Suomi, Tomi. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005562. Full description at Econpapers || Download paper | 6 |
32 | 2021 | Spec2Vec: Improved mass spectral similarity scoring through learning of structural relationships. (2021). , Justin ; Rogers, Simon ; Diblen, Faruk ; Spaaks, Jurriaan H ; Verhoeven, Stefan ; Ridder, Lars ; Huber, Florian. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008724. Full description at Econpapers || Download paper | 6 |
33 | 2019 | Evolutionary multiplayer games on graphs with edge diversity. (2019). Wang, Long ; Zhou, Lei ; Su, QI. In: PLOS Computational Biology. RePEc:plo:pcbi00:1006947. Full description at Econpapers || Download paper | 5 |
34 | 2012 | Exploring Massive, Genome Scale Datasets with the GenometriCorr Package. (2012). Wheelan, Sarah J ; Makeev, Vsevolod J ; Mironov, Andrey A ; Medvedeva, Yulia ; Cope, Leslie M ; Mularoni, Loris ; Favorov, Alexander. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002529. Full description at Econpapers || Download paper | 5 |
35 | 2016 | Neural Population Dynamics during Reaching Are Better Explained by a Dynamical System than Representational Tuning. (2016). Scherberger, Hansjorg ; Dann, Benjamin ; Michaels, Jonathan A. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005175. Full description at Econpapers || Download paper | 5 |
36 | 2015 | TRANSIT - A Software Tool for Himar1 TnSeq Analysis. (2015). Ioerger, Thomas R ; Sassetti, Christopher ; Baker, Richard ; Ambadipudi, Chaitra ; Dejesus, Michael A. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004401. Full description at Econpapers || Download paper | 5 |
37 | 2011 | Is My Network Module Preserved and Reproducible?. (2011). Horvath, Steve ; Oldham, Michael C ; Luo, Rui ; Langfelder, Peter. In: PLOS Computational Biology. RePEc:plo:pcbi00:1001057. Full description at Econpapers || Download paper | 5 |
38 | 2020 | Systems biology informed deep learning for inferring parameters and hidden dynamics. (2020). Em, George ; Raissi, Maziar ; Lu, LU ; Yazdani, Alireza . In: PLOS Computational Biology. RePEc:plo:pcbi00:1007575. Full description at Econpapers || Download paper | 5 |
39 | 2018 | Astrocytic Kir4.1 channels and gap junctions account for spontaneous epileptic seizure. (2018). Wu, Ying ; Yu, Yuguo ; Chen, Liang ; Li, Jiajia ; Du, Mengmeng. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005877. Full description at Econpapers || Download paper | 5 |
40 | 2021 | Generating functional protein variants with variational autoencoders. (2021). Bikard, David ; Chen, Arthur ; Couairon, Guillaume ; Baur, Sebastien ; Depardieu, Florence ; Hawkins-Hooker, Alex. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008736. Full description at Econpapers || Download paper | 5 |
41 | 2015 | Resting-State Temporal Synchronization Networks Emerge from Connectivity Topology and Heterogeneity. (2015). Corbetta, Maurizio ; Mantini, Dante ; Romani, Gian Luca ; Hagmann, Patric ; Deco, Gustavo ; Ponce-Alvarez, Adrian. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004100. Full description at Econpapers || Download paper | 5 |
42 | 2011 | Simulated Epidemics in an Empirical Spatiotemporal Network of 50,185 Sexual Contacts. (2011). Rocha, Luis ; Holme, Petter ; Liljeros, Fredrik ; Luis , . In: PLOS Computational Biology. RePEc:plo:pcbi00:1001109. Full description at Econpapers || Download paper | 5 |
43 | 2019 | Accuracy of real-time multi-model ensemble forecasts for seasonal influenza in the U.S.. (2019). Crawford-Crudell, Willow ; Brooks, Logan C ; Kandula, Sasikiran ; Osthus, Dave ; Shaman, Jeffrey ; Ray, Evan L ; Rosenfeld, Roni ; Tushar, Abhinav ; Johansson, Michael A ; Yamana, Teresa K ; Biggerstaff, Matthew ; McGowan, Craig J ; Silva, Rebecca ; Reich, Nicholas G ; Moore, Evan ; Gibson, Graham Casey. In: PLOS Computational Biology. RePEc:plo:pcbi00:1007486. Full description at Econpapers || Download paper | 5 |
44 | 2017 | A machine learning approach for predicting CRISPR-Cas9 cleavage efficiencies and patterns underlying its mechanism of action. (2017). Mayrose, Itay ; Amar, David ; Yan, Winston X ; Abadi, Shiran. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005807. Full description at Econpapers || Download paper | 5 |
45 | 2007 | Universally Sloppy Parameter Sensitivities in Systems Biology Models. (2007). Sethna, James P ; Myers, Christopher R ; Brown, Kevin S ; Casey, Fergal P ; Waterfall, Joshua J ; Gutenkunst, Ryan N. In: PLOS Computational Biology. RePEc:plo:pcbi00:0030189. Full description at Econpapers || Download paper | 5 |
46 | 2015 | Maximizing Sensory Dynamic Range by Tuning the Cortical State to Criticality. (2015). Shew, Woodrow L ; Grady, Stephen K ; McClanahan, Kylie ; Hoang, Thanh T ; Gautam, Shree Hari. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004576. Full description at Econpapers || Download paper | 4 |
47 | 2014 | Evolution of All-or-None Strategies in Repeated Public Goods Dilemmas. (2014). Pinheiro, Flávio ; Pacheco, Jorge M ; Santos, Francisco C ; Vasconcelos, Vitor V. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003945. Full description at Econpapers || Download paper | 4 |
48 | 2018 | Detection and analysis of spatiotemporal patterns in brain activity. (2018). Gong, Pulin ; Townsend, Rory G. In: PLOS Computational Biology. RePEc:plo:pcbi00:1006643. Full description at Econpapers || Download paper | 4 |
49 | 2010 | Avalanches in a Stochastic Model of Spiking Neurons. (2010). Wallace, Edward ; van Drongelen, Wim ; Cowan, Jack D ; Benayoun, Marc. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000846. Full description at Econpapers || Download paper | 4 |
50 | 2017 | Leveraging functional annotations in genetic risk prediction for human complex diseases. (2017). Zhao, Hongyu ; Xu, Xinran ; Fang, Fang ; Yang, Can ; Yao, Xinwei ; Powles, Ryan ; Lu, Qiongshi ; Hu, Yiming. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005589. Full description at Econpapers || Download paper | 4 |
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2023 | Intracellular tension sensor reveals mechanical anisotropy of the actin cytoskeleton. (2023). Murrell, Michael ; Calderwood, David A ; Schwartz, Martin A ; Huet-Calderwood, Clotilde ; Shang, Xingbo ; Muresan, Camelia ; Amiri, Sorosh. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-43612-5. Full description at Econpapers || Download paper | |
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2023 | Where Do Mistakes Lead? A Survey of Games with Incompetent Players. (2023). Filar, Jerzy A ; Kleshnina, Maria ; Graham, Thomas. In: Dynamic Games and Applications. RePEc:spr:dyngam:v:13:y:2023:i:1:d:10.1007_s13235-022-00425-3. Full description at Econpapers || Download paper | |
2023 | Action initiation and punishment learning differ from childhood to adolescence while reward learning remains stable. (2023). Dochnal, Roberta ; Lockwood, Patricia L ; Dikeos, Dimitris ; Brito, Stephane A ; Rogers, Jack C ; Freitag, Christine M ; Klein-Flugge, Miriam C ; Stadler, Christina ; Kohls, Gregor ; Popma, Arne ; Brazil, Inti A ; Konrad, Kerstin ; Pauli, Ruth ; Hervas, Amaia ; Herpertz-Dahlmann, Beate ; Fernandez-Rivas, Aranzazu ; Fairchild, Graeme. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-41124-w. Full description at Econpapers || Download Growth phase estimation for abundant bacterial populations sampled longitudinally from human stool metagenomes. (2023). Gibbons, Sean M ; Baliga, Nitin S ; Valenzuela, Jacob J ; Wilson, James ; Diener, Christian ; Lim, Joe J. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-41424-1. Full description at Econpapers || Download paper | |
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2023 | Brain-optimized deep neural network models of human visual areas learn non-hierarchical representations. (2023). Naselaris, Thomas ; Kay, Kendrick ; Wu, Yihan ; Allen, Emily J ; St-Yves, Ghislain. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-38674-4. Full description at Econpapers || Download paper | |
2023 | Phylodynamic of SARS-CoV-2 during the second wave of COVID-19 in Peru. (2023). Rebello, Joao Renato ; Bouckaert, Remco ; Aguilar, Mauro Quiones ; Silva, Cinthy Jimenez ; Uribe, Carmen Sofia ; Arevalo, Santiago Justo. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-39216-8. Full description at Econpapers || Download paper | |
2023 | Optimal strategies for coordinating infection control and socio-economic activities. (2023). Xiao, Yanni ; Li, Tangjuan. In: Mathematics and Computers in Simulation (MATCOM). RePEc:eee:matcom:v:207:y:2023:i:c:p:533-555. Full description at Econpapers || Download paper | |
2023 | Combining probabilistic forecasts of COVID-19 mortality in the United States. (2023). Taylor, Kathryn S. In: European Journal of Operational Research. RePEc:eee:ejores:v:304:y:2023:i:1:p:25-41. Full description at Econpapers || Download paper | |
2023 | Testing the predictive accuracy of COVID-19 forecasts. (2023). Paccagnini, Alessia ; Iacone, Fabrizio ; Coroneo, Laura ; Monteiro, Paulo Santos . In: International Journal of Forecasting. RePEc:eee:intfor:v:39:y:2023:i:2:p:606-622. Full description at Econpapers || Download paper | |
2023 | Comparing trained and untrained probabilistic ensemble forecasts of COVID-19 cases and deaths in the United States. (2023). Cramer, Estee Y ; Bracher, Johannes ; Bosse, Nikos I ; Reich, Nicholas G ; Biggerstaff, Matthew ; Tibshirani, Ryan J ; Bien, Jacob ; Zorn, Martha ; Brooks, Logan C ; Wang, Yijin ; Ray, Evan L ; Rumack, Aaron ; Johansson, Michael A ; Gerding, Aaron ; Funk, Sebastian. In: International Journal of Forecasting. RePEc:eee:intfor:v:39:y:2023:i:3:p:1366-1383. Full description at Econpapers || Download Forecast combinations: An over 50-year review. (2023). Li, Feng ; Kang, Yanfei ; Hyndman, Rob J ; Wang, Xiao Qian. In: International Journal of Forecasting. RePEc:eee:intfor:v:39:y:2023:i:4:p:1518-1547. Full description at Econpapers || Download paper | |
2023 | Modeling adaptive forward-looking behavior in epidemics on networks. (2023). Tizzoni, Michele ; Starnini, Michele ; Nemati, Lorenzo Amir. In: Papers. RePEc:arx:papers:2301.04947. Full description at Econpapers || Download paper | |
2023 | Built environment as interface: a relation-based framework for the intersections between built, biotic, social, and health processes during COVID-19 and beyond. (2023). Keyser, Vadim ; Howland, Hannah. In: Palgrave Communications. RePEc:pal:palcom:v:10:y:2023:i:1:d:10.1057_s41599-023-01735-6. Full description at Econpapers || Download paper | |
2023 | A nonstop thrill ride from genes to the assembly of the T3SS injectisome. (2023). Namboodiri, Sharanya ; Fishov, Itzhak. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-37753-w. Full description at Econpapers || Download paper | |
2023 | Mutant fixation in the presence of a natural enemy. (2023). Komarova, Natalia L ; Wodarz, Dominik. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-41787-5. Full description at Econpapers || Download paper | |
2023 | Annotation of natural product compound families using molecular networking topology and structural similarity fingerprinting. (2023). Linington, Roger G ; Gray, Christopher A ; Jake, F P ; Santen, Jeffrey A ; McMann, Emily J ; Clark, Trevor N ; Morehouse, Nicholas J. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-022-35734-z. Full description at Econpapers || Download paper | |
2023 | MS2Query: reliable and scalable MS2 mass spectra-based analogue search. (2023). , Justin ; Huber, Florian ; Jansen, Robert S ; Vermeir, Femke J ; Camuzeaux, Stephane ; Chekmeneva, Elena ; de Jonge, Niek F. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-37446-4. Full description at Econpapers || Download paper | |
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2023 | Latent generative landscapes as maps of functional diversity in protein sequence space. (2023). Morcos, Faruck ; Sinner, Claude ; Martin, Jonathan ; Ziegler, Cheyenne. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-37958-z. Full description at Econpapers || Download paper | |
2023 | Cell-free biosynthesis combined with deep learning accelerates de novo-development of antimicrobial peptides. (2023). Adam, David ; Erb, Tobias J ; Spahn, Christoph ; Pandi, Amir ; Vazquez, Olalla ; Braun, Peter ; Hummer, Gerhard ; Foroughijabbari, Yeganeh ; Schmeck, Bernd ; Kushwaha, Manish ; Abendroth, Frank ; Bobkova, Elizaveta ; Jung, Anna Lena ; Klabunde, Bjorn ; Bertrams, Wilhelm ; Burt, Marie ; Buttlar, Heiner ; Schaefer, Stefan L ; Bode, Helge B ; Trinh, Van Tuan ; von Strandmann, Elke Pogge ; Zare, Amir ; Preusser, Christian. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-42434-9. | |
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2023 | Effectiveness of feedback control and the trade-off between death by COVID-19 and costs of countermeasures. (2023). Matsuda, Hiroyuki ; Watanabe, Akira. In: Health Care Management Science. RePEc:kap:hcarem:v:26:y:2023:i:1:d:10.1007_s10729-022-09617-0. Full description at Econpapers || Download paper | |
2023 | Analysis of a hybrid SIR model combining the fixed-moments pulse interventions with susceptibles-triggered threshold policy. (2023). Xiao, Yanni ; Li, Qian. In: Applied Mathematics and Computation. RePEc:eee:apmaco:v:453:y:2023:i:c:s0096300323002515. Full description at Econpapers || Download paper | |
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2023 | Autoencoder neural networks enable low dimensional structure analyses of microbial growth dynamics. (2023). You, Lingchong ; Xu, Helen ; Ma, Helena R ; Baig, Yasa. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-43455-0. Full description at Econpapers || Download paper | |
2023 | Treatment Performance of Municipal Sewage in a Submerged Membrane Bioreactor (SMBR) and Mechanism of Biochar to Reduce Membrane Fouling. (2023). Guo, Junyuan ; Jiang, Jianying. In: Sustainability. RePEc:gam:jsusta:v:15:y:2023:i:12:p:9239-:d:1166019. Full description at Econpapers || Download paper | |
2023 | The integration of hierarchical levels of scale in tree species distribution models of silver fir (Abies alba Mill.) and European beech (Fagus sylvatica L.) in mountain forests. (2023). Wallentin, Gudrun ; Katzensteiner, Klaus ; Simon, Alois. In: Ecological Modelling. RePEc:eee:ecomod:v:485:y:2023:i:c:s0304380023002296. Full description at Econpapers || Download paper | |
2023 | Modeling Eye Movements During Decision Making: A Review. (2023). Lans, Ralf ; Pieters, Rik ; Wedel, Michel. In: Psychometrika. RePEc:spr:psycho:v:88:y:2023:i:2:d:10.1007_s11336-022-09876-4. Full description at Econpapers || Download paper | |
2023 | IMC-Denoise: a content aware denoising pipeline to enhance Imaging Mass Cytometry. (2023). Brennen, Nathaniel W ; Pachynski, Russell K ; Shim, Kevin G ; Ruzinova, Marianna B ; Bender, Diane E ; Oetjen, Karolyn A ; Lu, Peng ; Link, Daniel C ; Oh, Stephen T. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-37123-6. Full description at Econpapers || Download paper | |
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2023 | CellSighter: a neural network to classify cells in highly multiplexed images. (2023). Keren, Leeat ; Milo, Idan ; Bagon, Shai ; Feinstein, Ben ; Bussi, Yuval ; Amitay, Yael. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-40066-7. Full description at Econpapers || Download paper | |
2023 | Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering. (2023). Mrdjen, Dunja ; Leow, Ke Xuan ; McCaffrey, Erin F ; Kong, Alex ; Greenwald, Noah F ; Liu, Candace C ; Angelo, Michael ; Varra, Sricharan Reddy ; Rumberger, Josef Lorenz ; Cannon, Bryan J. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-40068-5. Full description at Econpapers || Download paper | |
2023 | Single-cell spatial metabolomics with cell-type specific protein profiling for tissue systems biology. (2023). Coskun, Ahmet F ; Beyaz, Semir ; Afkarian, Maryam ; Ievlev, Anton V ; Garipcan, Aybuke ; Yueh, Brian ; Henderson, Walter ; Cai, Shuangyi ; Allam, Mayar ; Hu, Thomas. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-43917-5. Full description at Econpapers || Download paper | |
2023 | Cost-effective fault diagnosis of nearby photovoltaic systems using graph neural networks. (2023). Develder, Chris ; Spina, Domenico ; van Gompel, Jonas. In: Energy. RePEc:eee:energy:v:266:y:2023:i:c:s0360544222033308. Full description at Econpapers || Download paper | |
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2023 | The dichotomous role of anisotropic sensing in pattern generation and disruption. (2023). Nava-Sedeo, Josue Manik ; del Sol, Maria ; Deutsch, Andreas. In: Physica A: Statistical Mechanics and its Applications. RePEc:eee:phsmap:v:630:y:2023:i:c:s0378437123008166. Full description at Econpapers || Download paper | |
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2023 | Hopf bifurcation mechanism analysis in an improved cortex-basal ganglia network with distributed delays: An application to Parkinsonâs disease. (2023). Xu, Minbo ; Zhou, Weiting ; Hu, Bing ; Wang, Zhizhi. In: Chaos, Solitons & Fractals. RePEc:eee:chsofr:v:166:y:2023:i:c:s0960077922012012. Full description at Econpapers || Download paper | |
2023 | Contribution of pks+ E. coli mutations to colorectal carcinogenesis. (2023). Sottoriva, Andrea ; Graham, Trevor A ; Magnani, Luca ; James, Chela ; Fernandez-Mateos, Javier ; Spiteri, Inmaculada ; Heide, Timon ; Ramazzotti, Daniele ; Chen, Bingjie. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-43329-5. Full description at Econpapers || Download paper | |
2023 | Using drivers and transmission pathways to identify SARS-like coronavirus spillover risk hotspots. (2023). Wilkinson, David A ; Muylaert, Renata L ; Alviola, Phillip ; John, Reju Sam ; Galli, Nikolas ; Rulli, Maria Cristina ; Dodorico, Paolo ; Kingston, Tigga. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-42627-2. Full description at Econpapers || Download paper | |
2023 | Scalable Inverse Uncertainty Quantification by Hierarchical Bayesian Modeling and Variational Inference. (2023). Kozlowski, Tomasz ; Xie, Ziyu ; Wu, XU ; Wang, Chen. In: Energies. RePEc:gam:jeners:v:16:y:2023:i:22:p:7664-:d:1283648. Full description at Econpapers || Download paper | |
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2023 | The gut microbiome and early-life growth in a population with high prevalence of stunting. (2023). Humphrey, Jean H ; Baharmand, Iman ; Stoltzfus, Rebecca J ; Geum, Hyun Min ; Tome, Joice ; Evans, Ceri ; Francis, Freddy ; Gough, Ethan K ; Mutasa, Batsirai ; Tavengwa, Naume V ; Carr, Lynnea ; Majo, Florence D ; Edens, Thaddeus J ; Chasekwa, Bernard ; Robertson, Ruairi C ; Smith, Laura E ; Manges, Amee R ; Ntozini, Robert ; Prendergast, Andrew J ; Gill, Sandeep K. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-36135-6. Full description at Econpapers || Download Gut microbiota alters host bile acid metabolism to contribute to intrahepatic cholestasis of pregnancy. (2023). Yang, Min ; Wang, Sumin ; Li, Pan ; He, Jialin ; Chen, Xia ; Liu, Shuang ; Ouyang, Qin ; Hu, Hua ; Tang, LI ; Tu, Dianji ; Lei, Yuanyuan ; Zhang, Longhui. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-36981-4. Full description at Econpapers || Download paper | |
2023 | Altered human gut virome in patients undergoing antibiotics therapy for Helicobacter pylori. (2023). Leung, Wai K ; Yi, Suet ; Lau, Kam Shing ; Morgan, Daniel C ; Yao, Haobin ; Wang, Lingling. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-37975-y. Full description at Econpapers || Download paper | |
2023 | Gut microbiome dysbiosis across early Parkinsonâs disease, REM sleep behavior disorder and their first-degree relatives. (2023). Chen, Zigui ; Yeoh, Yun Kit ; Wing, Yun Kwok ; Zhang, Jihui ; Trenkwalder, Claudia ; Ma, Suk Ling ; Wang, Jing ; Lai, Hei Ming ; To, Ka Fai ; Liu, Yaping ; Wong, Sunny Hei ; Huang, Bei ; Zhou, LI. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-38248-4. Full description at Econpapers || Download paper | |
2023 | Host-diet-gut microbiome interactions influence human energy balance: a randomized clinical trial. (2023). Pratley, Richard E ; Davis, Taylor L ; Marcus, Andrew ; Yi, Fanchao ; Igudesman, Daria ; Dirks, Blake ; Carnero, Elvis A ; Corbin, Karen D ; Smith, Steven R ; Krajmalnik-Brown, Rosa ; Rittmann, Bruce E. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-38778-x. Full description at Econpapers || Download paper | |
2023 | Delayed gut microbiota maturation in the first year of life is a hallmark of pediatric allergic disease. (2023). Finlay, Brett B ; Mandhane, Piushkumar J ; Moraes, Theo J ; Becker, Allan B ; Bel, Kate L ; Turvey, Stuart E ; Petersen, Charisse ; Hoskinson, Courtney ; Subbarao, Padmaja ; Azad, Meghan B ; Kozyrskyj, Anita L ; Simons, Elinor. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-40336-4. Full description at Econpapers || Download Mutual modulation of gut microbiota and the immune system in type 1 diabetes models. (2023). Serrano-Gomez, Gerard ; Panosa, Anais ; Cosovanu, Catalina ; Arpa, Berta ; Egia-Mendikute, Leire ; Varela, Encarna ; Yaez, Francisca ; Corral-Pujol, Marta ; Manichanh, Chaysavanh ; Santiago, Alba ; Verdaguer, Joan ; Rosell-Mases, Estela ; Mora, Conchi. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-43652-x. Full description at Econpapers || Download Sampling-based Bayesian inference in recurrent circuits of stochastic spiking neurons. (2023). Wu, SI ; Zhang, Wen-Hao ; Doiron, Brent ; Josi, Kreimir. In: Nature Communications. RePEc:nat:natcom:v:14:y:2023:i:1:d:10.1038_s41467-023-41743-3. Full description at Econpapers || Download paper | |
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2023 | An integrated chance constraints approach for optimal vaccination strategies under uncertainty for COVID-19. (2023). Ntaimo, Lewis ; Gujjula, Krishna Reddy ; Gong, Jiangyue. In: Socio-Economic Planning Sciences. RePEc:eee:soceps:v:87:y:2023:i:pa:s0038012123000472. Full description at Econpapers || Download paper | |
2023 | High monoclonal neutralization titers reduced breakthrough HIV-1 viral loads in the Antibody Mediated Prevention trials. (2023). Montefiori, David C ; Sobieszczyk, Magdalena E ; Seaton, Kelly E ; Gilbert, Peter B ; Casapia, Martin ; Mullins, James I ; Juraska, Michal ; Goepfert, Paul A ; Williamson, Carolyn ; Magaret, Craig A ; Orrell, Catherine ; Mkhize, Nonhlanhla N ; Carpp, Lindsay N ; Naidoo, Logashvari ; Morris, Lynn ; Zhang, BO ; Corey, Lawrence ; Edlefsen, Paul ; Huang, Yunda ; Cohen, Myron S ; Rossenkhan, Raabya ; Decamp, Allan C ; Ledgerwood, Julie E ; Schiffer, Joshua T ; Mayer, Bryan T ; Mgodi, Nyaradzo ; Cardozo-Ojeda, Fabian E ; Edupuganti, Srilatha ; Reeves, Daniel B ; Andrew, Philip ; Bar, Katharine J ; Karuna, Shelly T ; Tomaras, Georgia D. In: Nature Co |
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2022 | Spatial dynamics of a fractional predator-prey system with time delay and Allee effect. (2022). Ouyang, Miao ; Liu, Shutang ; Bi, Zhimin. In: Chaos, Solitons & Fractals. RePEc:eee:chsofr:v:162:y:2022:i:c:s0960077922006440. Full description at Econpapers || Download paper | |
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2022 | Tracking changes in SARS-CoV-2 transmission with a novel outpatient sentinel surveillance system in Chicago, USA. (2022). Pacilli, Massimo ; Ghinai, Isaac ; Cobey, Sarah ; Lightner, Shannon ; Gerardin, Jaline ; Holden, Tobias M ; Arevalo, Philip ; Jorgensen, Emile ; Richardson, Reese ; Gostic, Katelyn M. In: Nature Communications. RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-33317-6. Full description at Econpapers || Download paper |
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2021 | A spline-based time-varying reproduction number for modelling epidemiological outbreaks. (2021). Pircalabelu, Eugen. In: LIDAM Discussion Papers ISBA. RePEc:aiz:louvad:2021030. Full description at Econpapers || Download paper | |
2021 | Media discourses about a superspreader destination: How mismanagement of Covid-19 triggers debates about sustainability and geopolitics. (2021). Peters, Mike ; Pikkemaat, Birgit ; Bichler, Bernhard Fabian ; Mayer, Marius. In: Annals of Tourism Research. RePEc:eee:anture:v:91:y:2021:i:c:s0160738321001560. Full description at Econpapers || Download paper | |
2021 | . Full description at Econpapers || Download paper | |
2021 | . Full description at Econpapers || Download paper | |
2021 | Quantifying previous SARS-CoV-2 infection through mixture modelling of antibody levels. (2021). Agweyu, A ; Bottomley, C ; I. M. O. Adetifa, ; Nyagwange, J ; Karanja, H ; Gitonga, J ; Mugo, D ; Etyang, A O ; Kagucia, E W ; J. A. G. Scott, ; Gallagher, K ; Warimwe, G M ; Uyoga, S ; Nokes, D J ; Otiende, M. In: Nature Communications. RePEc:nat:natcom:v:12:y:2021:i:1:d:10.1038_s41467-021-26452-z. Full description at Econpapers || Download paper | |
2021 | The generative capacity of probabilistic protein sequence models. (2021). McGee, Francisco ; Haldane, Allan ; Carnevale, Vincenzo ; Levy, Ronald M ; Vucetic, Slobodan ; Novinger, Quentin ; Hauri, Sandro. In: Nature Communications. RePEc:nat:natcom:v:12:y:2021:i:1:d:10.1038_s41467-021-26529-9. Full description at Econpapers || Download paper | |
2021 | scCODA is a Bayesian model for compositional single-cell data analysis. (2021). Schubert, B ; Theis, F J ; Muller, C L ; Ostner, J ; Buttner, M. In: Nature Communications. RePEc:nat:natcom:v:12:y:2021:i:1:d:10.1038_s41467-021-27150-6. Full description at Econpapers || Download paper | |
2021 | Perceptions of risk for COVID-19 among individuals with chronic diseases and stakeholders in Central Appalachia. (2021). Awasthi, Manul ; Stewart, David W ; Dowling-McClay, Karilynn ; Weierbach, Florence M ; Mamudu, Hadii M ; Ahuja, Manik ; Paul, Timir K. In: Palgrave Communications. RePEc:pal:palcom:v:8:y:2021:i:1:d:10.1057_s41599-021-00906-7. Full description at Econpapers || Download paper | |
2021 | Cluster size distribution of cells disseminating from a primary tumor. (2021). Levine, Herbert ; Mukherjee, Mrinmoy. In: PLOS Computational Biology. RePEc:plo:pcbi00:1009011. Full description at Econpapers || Download paper | |
2021 | Novelty is not surprise: Human exploratory and adaptive behavior in sequential decision-making. (2021). Herzog, Michael H ; Gerstner, Wulfram ; Lehmann, Marco P ; Modirshanechi, Alireza ; Xu, He A. In: PLOS Computational Biology. RePEc:plo:pcbi00:1009070. Full description at Econpapers || Download paper | |
2021 | Phenotypic-dependent variability and the emergence of tolerance in bacterial populations. (2021). Muoz, Miguel A ; Sireci, Matteo ; Mateu, Jose Camacho. In: PLOS Computational Biology. RePEc:plo:pcbi00:1009417. Full description at Econpapers || Download paper | |
2021 | The role of competition versus cooperation in microbial community coalescence. (2021). Pawar, Samraat ; Smith, Thomas P ; Cook, Jacob ; Clegg, Tom ; Lechon-Alonso, Pablo. In: PLOS Computational Biology. RePEc:plo:pcbi00:1009584. Full description at Econpapers || Download paper | |
2021 | Strategie di governo e strutture egemoniche in tempo di pandemia. (2021). Bellanca, Nicolo', . In: MPRA Paper. RePEc:pra:mprapa:111234. Full description at Econpapers || Download paper |
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2020 | Socioeconomic Network Heterogeneity and Pandemic Policy Response. (2020). Cook, Cody ; Akbarpour, Mohammad ; Yang, Hanbin ; Vasserman, Shoshana ; Tebaldi, Pietro ; Saccarola, Matteo ; Nagaraj, Abhishek ; Mongey, Simon ; Marzuoli, Aude. In: Working Papers. RePEc:bfi:wpaper:2020-75. Full description at Econpapers || Download paper | |
2020 | Disentangling the biotic and abiotic drivers of emergent migratory behavior using individual-based models. (2020). Fiechter, Jerome ; Bograd, Steven J ; Abrahms, Briana ; Dodson, Stephanie ; Hazen, Elliott L. In: Ecological Modelling. RePEc:eee:ecomod:v:432:y:2020:i:c:s0304380020302957. Full description at Econpapers || Download paper | |
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2020 | . Full description at Econpapers || Download paper | |
2020 | . Full description at Econpapers || Download paper | |
2020 | Socioeconomic Network Heterogeneity and Pandemic Policy Response. (2020). Vasserman, Shoshana ; Tebaldi, Pietro ; Mongey, Simon ; Marzuoli, Aude ; Cook, Cody ; Akbarpour, Mohammad ; Yang, Hanbin ; Saccarola, Matteo ; Nagaraj, Abhishek. In: NBER Working Papers. RePEc:nbr:nberwo:27374. Full description at Econpapers || Download paper | |
2020 | Limits on amplifiers of natural selection under death-Birth updating. (2020). Nowak, Martin A ; Chatterjee, Krishnendu ; Pavlogiannis, Andreas ; Tkadlec, Josef. In: PLOS Computational Biology. RePEc:plo:pcbi00:1007494. Full description at Econpapers || Download paper | |
2020 | Transient amplifiers of selection and reducers of fixation for death-Birth updating on graphs. (2020). Lippner, Gabor ; Parke, Darren ; Kolodny, Joshua ; Brizuela, Lori ; Steinhagen, Patricia ; Withers, James ; Jencks, Robert ; Sample, Christine ; Allen, Benjamin ; Dementieva, Yulia A. In: PLOS Computational Biology. RePEc:plo:pcbi00:1007529. Full description at Econpapers || Download paper | |
2020 | Time varying methods to infer extremes in dengue transmission dynamics. (2020). Cook, Alex R ; Ng, Lee Ching ; Lee, Borame Sue ; Han, Yi Ting ; Lim, Jue Tao. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008279. Full description at Econpapers || Download paper | |
2020 | The Moran process on 2-chromatic graphs. (2020). Nowak, Martin A ; Chatterjee, Krishnendu ; McAvoy, Alex ; Kaveh, Kamran. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008402. Full description at Econpapers || Download paper | |
2020 | Ten simple rules for starting research in your late teens. (2020). Bourne, Philip E ; Chalupa, Jack ; Newbury, Abigail M ; Mura, Cameron. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008403. Full description at Econpapers || Download paper | |
2020 | Modeling habitat connectivity in support of multiobjective species movement: An application to amphibian habitat systems. (2020). Trauth, Kathleen M ; Gholamialam, Ashkan ; Matisziw, Timothy C. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008540. Full description at Econpapers || Download paper | |
2020 | Impact of sars-cov-2 interventions on dengue transmission. (2020). Cook, Alex R ; Ng, Lee Ching ; Aik, Joel ; Koo, Joel Ruihan ; Li, Esther ; Xiong, Lawrence Zheng ; Lee, Borame Sue ; Lim, Jue Tao. In: PLOS Neglected Tropical Diseases. RePEc:plo:pntd00:0008719. Full description at Econpapers || Download paper | |
2020 | Two-step multi-omics modelling of drug sensitivity in cancer cell lines to identify driving mechanisms. (2020). Schuppert, Andreas ; Kusch, Nina. In: PLOS ONE. RePEc:plo:pone00:0238961. Full description at Econpapers || Download paper | |
2020 | Directionally dependent multi-view clustering using copula model. (2020). Mallick, Bani K ; Lee, Se Yoon ; Souris, Allyson ; Karimi, Mostafa ; Iquebal, Ashif S ; Afrin, Kahkashan. In: PLOS ONE. RePEc:plo:pone00:0238996. Full description at Econpapers || Download paper | |
2020 | Societal and economic factors associated with COVID-19 indicate that developing countries could suffer the most. (2020). Foster, Kathleen Lois ; Selvitella, Alessandro Maria. In: Technium Social Sciences Journal. RePEc:tec:journl:v:10:y:2020:i:1:p:637-644. Full description at Econpapers || Download paper |