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Citation Profile [Updated: 2025-11-20 18:08:17]
5 Years H Index
23
Impact Factor (IF)
0.02
5 Years IF
0.11
Data available in this report

[Raw data] [50 most cited papers] [50 most relevant papers] [cites used to compute IF] [Recent citations ][Frequent citing series ] [more data in EconPapers] [trace new citations] [Missing citations? Add them now] [Incorrect content? Let us know]

Main indicators
Raw Data

 

IF AIF CIF IF5 DOC CDO CIT NCI CCU D2Y C2Y D5Y C5Y SC %SC CiY II AII
2005 0 0.5 0 0 22 22 51 1 0 0 0 0 0.23
2006 0.23 0.49 0.11 0.23 61 83 256 9 10 22 5 22 5 9 100 4 0.07 0.22
2007 0.18 0.44 0.16 0.18 92 175 288 28 38 83 15 83 15 25 89.3 3 0.03 0.2
2008 0.21 0.47 0.15 0.21 122 297 322 45 83 153 32 175 36 27 60 5 0.04 0.22
2009 0.17 0.46 0.15 0.16 159 456 369 69 152 214 36 297 47 47 68.1 6 0.04 0.23
2010 0.22 0.46 0.18 0.18 177 633 605 113 265 281 61 456 82 71 62.8 5 0.03 0.2
2011 0.18 0.51 0.2 0.19 189 822 466 164 429 336 60 611 119 70 42.7 11 0.06 0.24
2012 0.22 0.5 0.22 0.21 215 1037 326 226 655 366 81 739 157 103 45.6 15 0.07 0.21
2013 0.19 0.54 0.22 0.21 252 1289 450 280 935 404 77 862 184 122 43.6 8 0.03 0.24
2014 0.13 0.53 0.18 0.17 292 1581 470 286 1221 467 61 992 170 164 57.3 10 0.03 0.22
2015 0.14 0.53 0.15 0.14 304 1885 612 282 1503 544 77 1125 156 153 54.3 6 0.02 0.22
2016 0.12 0.5 0.14 0.11 288 2173 382 304 1807 596 72 1252 139 181 59.5 10 0.03 0.2
2017 0.13 0.52 0.15 0.12 326 2499 427 374 2181 592 78 1351 161 227 60.7 8 0.02 0.21
2018 0.1 0.53 0.12 0.11 297 2796 293 325 2506 614 64 1462 162 141 43.4 7 0.02 0.22
2019 0.12 0.54 0.14 0.12 374 3170 244 430 2936 623 72 1507 180 257 59.8 8 0.02 0.21
2020 0.1 0.64 0.13 0.12 400 3570 287 479 3415 671 67 1589 183 225 47 18 0.05 0.3
2021 0.1 0.74 0.12 0.1 364 3934 276 457 3872 774 77 1685 174 107 23.4 15 0.04 0.27
2022 0.14 0.74 0.15 0.14 337 4271 50 654 4526 764 106 1761 252 72 11 3 0.01 0.22
2023 0.11 0.7 0.13 0.12 266 4537 23 603 5129 701 77 1772 207 64 10.6 0 0.2
2024 0.02 0.82 0.15 0.11 299 4836 10 720 5849 603 10 1741 185 56 7.8 0 0.24
IF: Two years Impact Factor: C2Y / D2Y
AIF: Average Impact Factor for all series in RePEc in year y
CIF: Cumulative impact factor
IF5: Five years Impact Factor: C5Y / D5Y
DOC: Number of documents published in year y
CDO: Cumulative number of documents published until year y
CIT: Number of citations to papers published in year y
NCI: Number of citations in year y
CCU: Cumulative number of citations to papers published until year y
D2Y: Number of articles published in y-1 plus y-2
C2Y: Cites in y to articles published in y-1 plus y-2
D5Y: Number of articles published in y-1 until y-5
C5Y: Cites in y to articles published in y-1 until y-5
SC: selft citations in y to articles published in y-1 plus y-2
%SC: Percentage of selft citations in y to articles published in y-1 plus y-2
CiY: Cites in year y to documents published in year y
II: Immediacy Index: CiY / Documents.
AII: Average Immediacy Index for series in RePEc in year y
50 most cited documents in this series
#YearTitleCited
12010Evolutionary Establishment of Moral and Double Moral Standards through Spatial Interactions. (2010). Perc, Matja ; Szabo, Gyorgy ; Helbing, Dirk ; Szolnoki, Attila. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000758.

Full description at Econpapers || Download paper

110
22013Software for Computing and Annotating Genomic Ranges. (2013). Aboyoun, Patrick ; Lawrence, Michael ; Morgan, Martin T ; Carlson, Marc ; Pages, Herve ; Huber, Wolfgang ; Carey, Vincent J ; Gentleman, Robert. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003118.

Full description at Econpapers || Download paper

109
32015MAGMA: Generalized Gene-Set Analysis of GWAS Data. (2015). Heskes, Tom ; Mooij, Joris M ; Posthuma, Danielle ; de Leeuw, Christiaan A. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004219.

Full description at Econpapers || Download paper

96
42006Cooperation Prevails When Individuals Adjust Their Social Ties. (2006). Lenaerts, Tom ; Pacheco, Jorge M ; Santos, Francisco C. In: PLOS Computational Biology. RePEc:plo:pcbi00:0020140.

Full description at Econpapers || Download paper

89
52010Game Theory of Social Distancing in Response to an Epidemic. (2010). Reluga, Timothy C. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000793.

Full description at Econpapers || Download paper

66
62018Punishment and inspection for governing the commons in a feedback-evolving game. (2018). Chen, Xiaojie ; Szolnoki, Attila. In: PLOS Computational Biology. RePEc:plo:pcbi00:1006347.

Full description at Econpapers || Download paper

61
72017OpenMM 7: Rapid development of high performance algorithms for molecular dynamics. (2017). Chodera, John D ; Swails, Jason ; Stern, Chaya D ; Zhao, Yutong ; Brooks, Bernard R ; Pande, Vijay S ; Simmonett, Andrew C ; McGibbon, Robert T ; Wiewiora, Rafal P ; Eastman, Peter ; Harrigan, Matthew P ; Wang, Lee-Ping ; Beauchamp, Kyle A. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005659.

Full description at Econpapers || Download paper

60
82010Dynamics and Control of Diseases in Networks with Community Structure. (2010). Salathe, Marcel ; Jones, James H. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000736.

Full description at Econpapers || Download paper

58
92007Universally Sloppy Parameter Sensitivities in Systems Biology Models. (2007). Brown, Kevin S ; Waterfall, Joshua J ; Sethna, James P ; Casey, Fergal P ; Myers, Christopher R ; Gutenkunst, Ryan N. In: PLOS Computational Biology. RePEc:plo:pcbi00:0030189.

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54
102021Multivariable association discovery in population-scale meta-omics studies. (2021). Ma, Siyuan ; Schwager, Emma H ; Nguyen, Long H ; Huttenhower, Curtis ; Waldron, Levi ; Ren, Boyu ; McIver, Lauren J ; Subramanian, Ayshwarya ; Thompson, Kelsey N ; Rahnavard, Ali ; Paulson, Joseph N ; Wilkinson, Jeremy E ; Lu, Yiren ; Mallick, Himel ; Zhang, Yancong ; Bravo, Hector Corrada ; Tickle, Timothy L ; Weingart, George ; Chatterjee, Suvo ; Franzosa, Eric A. In: PLOS Computational Biology. RePEc:plo:pcbi00:1009442.

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50
112012Evolutionary Game Theory and Social Learning Can Determine How Vaccine Scares Unfold. (2012). Bhattacharyya, Samit ; Bauch, Chris T. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002452.

Full description at Econpapers || Download paper

39
122015Sparse and Compositionally Robust Inference of Microbial Ecological Networks. (2015). Bonneau, Richard A ; Blaser, Martin J ; Miraldi, Emily R ; Littman, Dan R ; Muller, Christian L ; Kurtz, Zachary D. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004226.

Full description at Econpapers || Download paper

34
132013Approximate Bayesian Computation. (2013). Foll, Matthieu ; Corander, Jukka ; Numminen, Elina ; Dessimoz, Christophe ; Busetto, Alberto Giovanni ; Sunnker, Mikael. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002803.

Full description at Econpapers || Download paper

32
142020Practical considerations for measuring the effective reproductive number, Rt. (2020). de Salazar, Pablo M ; Munday, James D ; Bosse, Nikos I ; Hay, James A ; Stadler, Tanja ; Lipsitch, Marc ; Wallinga, Jacco ; Meakin, Sophie ; McGough, Lauren ; Baskerville, Edward B ; Funk, Sebastian ; White, Laura F ; Tedijanto, Christine ; Bonhoeffer, Sebastian ; Joshi, Keya ; Cobey, Sarah ; Sherrat, Katharine ; Abbott, Sam ; Gostic, Katelyn M ; Thompson, Robin N ; Hellewell, Joel ; Niehus, Rene ; Scire, Jeremie ; Kahn, Rebecca ; Huisman, Jana S. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008409.

Full description at Econpapers || Download paper

32
152009Broadband Criticality of Human Brain Network Synchronization. (2009). Christensen, Soren R ; Smith, Marie L ; Kitzbichler, Manfred G ; Bullmore, ED. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000314.

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28
162014Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible. (2014). Holmes, Susan ; McMurdie, Paul J. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003531.

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27
172014VBA: A Probabilistic Treatment of Nonlinear Models for Neurobiological and Behavioural Data. (2014). Adam, Vincent ; Rigoux, Lionel ; Daunizeau, Jean. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003441.

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26
182011Mitigation Strategies for Pandemic Influenza A: Balancing Conflicting Policy Objectives. (2011). Anderson, Roy M ; Heesterbeek, Hans ; Klinkenberg, Don ; Hollingsworth, Deirdre T. In: PLOS Computational Biology. RePEc:plo:pcbi00:1001076.

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25
192014A Toolbox for Representational Similarity Analysis. (2014). Kriegeskorte, Nikolaus ; Su, LI ; Nili, Hamed ; Wingfield, Cai ; Walther, Alexander ; Marslen-Wilson, William. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003553.

Full description at Econpapers || Download paper

25
202009Semantic Similarity in Biomedical Ontologies. (2009). Lord, Phillip ; Couto, Francisco M ; Faria, Daniel ; Pesquita, Catia ; Falco, Andre O. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000443.

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25
212017Fast online deconvolution of calcium imaging data. (2017). Zhou, Pengcheng ; Paninski, Liam ; Friedrich, Johannes. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005423.

Full description at Econpapers || Download paper

24
222017mixOmics: An R package for ‘omics feature selection and multiple data integration. (2017). le Cao, Kim-Anh ; Rohart, Florian ; Gautier, Benoit ; Singh, Amrit. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005752.

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24
232011Accelerated Profile HMM Searches. (2011). Eddy, Sean R. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002195.

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24
242016Efficient Coalescent Simulation and Genealogical Analysis for Large Sample Sizes. (2016). Kelleher, Jerome ; McVean, Gilean ; Etheridge, Alison M. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004842.

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22
252010A Bayesian Framework to Account for Complex Non-Genetic Factors in Gene Expression Levels Greatly Increases Power in eQTL Studies. (2010). Durbin, Richard ; Stegle, Oliver ; Parts, Leopold ; Winn, John. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000770.

Full description at Econpapers || Download paper

22
262010Comparing Families of Dynamic Causal Models. (2010). Rosa, Maria J ; Stephan, Klaas E ; Friston, Karl J ; Daunizeau, Jean ; Leff, Alex P ; Penny, Will D ; Schofield, Thomas M. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000709.

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22
272010Associating Genes and Protein Complexes with Disease via Network Propagation. (2010). Shlomi, Tomer ; Sharan, Roded ; Vanunu, Oron ; Magger, Oded ; Ruppin, Eytan. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000641.

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22
282014Evolutionary Game Dynamics in Populations with Heterogenous Structures. (2014). Maciejewski, Wes ; Fu, Feng ; Hauert, Christoph. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003567.

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22
292016Reinforcement Learning Explains Conditional Cooperation and Its Moody Cousin. (2016). Horita, Yutaka ; Ezaki, Takahiro ; Masuda, Naoki ; Takezawa, Masanori. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005034.

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21
302015VDJtools: Unifying Post-analysis of T Cell Receptor Repertoires. (2015). Skorobogatova, Elena V ; Putintseva, Ekaterina V ; Bagaev, Dmitriy V ; Kirgizova, Vitalina I ; Chudakov, Dmitriy M ; Nazarov, Vadim I ; Bolotin, Dmitriy A ; Britanova, Olga V ; Pogorelyy, Mikhail V ; Shugay, Mikhail ; Turchaninova, Maria A ; Zvyagin, Ivan V. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004503.

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21
312011How Structure Determines Correlations in Neuronal Networks. (2011). Pernice, Volker ; Rotter, Stefan ; Cardanobile, Stefano ; Staude, Benjamin. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002059.

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20
322009Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples. (2009). Nagarajan, Niranjan ; Pop, Mihai ; White, James Robert. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000352.

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20
332007Machine Learning and Its Applications to Biology. (2007). Chen, Xue-Wen ; Carey, Vincent J ; Drghici, Sorin ; Romero, Roberto ; Tarca, Adi L. In: PLOS Computational Biology. RePEc:plo:pcbi00:0030116.

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20
342008Hierarchical Models in the Brain. (2008). Friston, Karl. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000211.

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19
352011Risk, Unexpected Uncertainty, and Estimation Uncertainty: Bayesian Learning in Unstable Settings. (2011). Bossaerts, Peter ; Payzan-Lenestour, Elise. In: PLOS Computational Biology. RePEc:plo:pcbi00:1001048.

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19
362008Support Vector Machines and Kernels for Computational Biology. (2008). Sonnenburg, Soren ; Ratsch, Gunnar ; Ong, Cheng Soon ; Scholkopf, Bernhard ; Ben-Hur, Asa. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000173.

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18
372018Prediction of infectious disease epidemics via weighted density ensembles. (2018). Reich, Nicholas G ; Ray, Evan L. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005910.

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18
382012Traffic Instabilities in Self-Organized Pedestrian Crowds. (2012). Pettre, Julien ; Fehrenbach, Jerome ; Theraulaz, Guy ; Guillot, Elsa G ; Appert-Rolland, Cecile ; Lemercier, Samuel ; Degond, Pierre ; Chabiron, Olivier ; Moussaid, Mehdi ; Moreau, Mathieu. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002442.

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18
392006Nonoptimal Component Placement, but Short Processing Paths, due to Long-Distance Projections in Neural Systems. (2006). Kaiser, Marcus ; Hilgetag, Claus C. In: PLOS Computational Biology. RePEc:plo:pcbi00:0020095.

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18
402009Population Structure Induces a Symmetry Breaking Favoring the Emergence of Cooperation. (2009). Pinheiro, Flávio ; Pacheco, Jorge M ; Santos, Francisco C. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000596.

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18
412014Comparison of Filtering Methods for the Modeling and Retrospective Forecasting of Influenza Epidemics. (2014). Yang, Wan ; Shaman, Jeffrey ; Karspeck, Alicia. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003583.

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17
422021Evaluating epidemic forecasts in an interval format. (2021). Gneiting, Tilmann ; Reich, Nicholas G ; Bracher, Johannes ; Ray, Evan L. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008618.

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17
432005Ten Simple Rules for Getting Published. (2005). Bourne, Philip E. In: PLOS Computational Biology. RePEc:plo:pcbi00:0010057.

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17
442010Parameter Estimation and Model Selection in Computational Biology. (2010). Khammash, Mustafa ; Lillacci, Gabriele. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000696.

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17
452015The Effect of Incentives and Meta-incentives on the Evolution of Cooperation. (2015). Sasaki, Tatsuya ; Okada, Isamu ; Yamamoto, Hitoshi ; Toriumi, Fujio. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004232.

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17
462008Nonnegative Matrix Factorization: An Analytical and Interpretive Tool in Computational Biology. (2008). Devarajan, Karthik. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000029.

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17
472010Probability Matching as a Computational Strategy Used in Perception. (2010). Beierholm, Ulrik R ; Shams, Ladan ; Wozny, David R. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000871.

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17
482014On the Origins of Suboptimality in Human Probabilistic Inference. (2014). Vijayakumar, Sethu ; Acerbi, Luigi ; Wolpert, Daniel M. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003661.

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17
492011Simulated Epidemics in an Empirical Spatiotemporal Network of 50,185 Sexual Contacts. (2011). Rocha, Luis ; Holme, Petter ; Liljeros, Fredrik. In: PLOS Computational Biology. RePEc:plo:pcbi00:1001109.

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16
502015Asymmetric Evolutionary Games. (2015). Hauert, Christoph ; McAvoy, Alex. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004349.

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16
50 most relevant documents in this series (papers most cited in the last two years)
#YearTitleCited
12013Software for Computing and Annotating Genomic Ranges. (2013). Aboyoun, Patrick ; Lawrence, Michael ; Morgan, Martin T ; Carlson, Marc ; Pages, Herve ; Huber, Wolfgang ; Carey, Vincent J ; Gentleman, Robert. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003118.

Full description at Econpapers || Download paper

88
22015MAGMA: Generalized Gene-Set Analysis of GWAS Data. (2015). Heskes, Tom ; Mooij, Joris M ; Posthuma, Danielle ; de Leeuw, Christiaan A. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004219.

Full description at Econpapers || Download paper

76
32017OpenMM 7: Rapid development of high performance algorithms for molecular dynamics. (2017). Chodera, John D ; Swails, Jason ; Stern, Chaya D ; Zhao, Yutong ; Brooks, Bernard R ; Pande, Vijay S ; Simmonett, Andrew C ; McGibbon, Robert T ; Wiewiora, Rafal P ; Eastman, Peter ; Harrigan, Matthew P ; Wang, Lee-Ping ; Beauchamp, Kyle A. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005659.

Full description at Econpapers || Download paper

49
42010Evolutionary Establishment of Moral and Double Moral Standards through Spatial Interactions. (2010). Perc, Matja ; Szabo, Gyorgy ; Helbing, Dirk ; Szolnoki, Attila. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000758.

Full description at Econpapers || Download paper

45
52021Multivariable association discovery in population-scale meta-omics studies. (2021). Ma, Siyuan ; Schwager, Emma H ; Nguyen, Long H ; Huttenhower, Curtis ; Waldron, Levi ; Ren, Boyu ; McIver, Lauren J ; Subramanian, Ayshwarya ; Thompson, Kelsey N ; Rahnavard, Ali ; Paulson, Joseph N ; Wilkinson, Jeremy E ; Lu, Yiren ; Mallick, Himel ; Zhang, Yancong ; Bravo, Hector Corrada ; Tickle, Timothy L ; Weingart, George ; Chatterjee, Suvo ; Franzosa, Eric A. In: PLOS Computational Biology. RePEc:plo:pcbi00:1009442.

Full description at Econpapers || Download paper

45
62018Punishment and inspection for governing the commons in a feedback-evolving game. (2018). Chen, Xiaojie ; Szolnoki, Attila. In: PLOS Computational Biology. RePEc:plo:pcbi00:1006347.

Full description at Econpapers || Download paper

29
72010Game Theory of Social Distancing in Response to an Epidemic. (2010). Reluga, Timothy C. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000793.

Full description at Econpapers || Download paper

19
82017mixOmics: An R package for ‘omics feature selection and multiple data integration. (2017). le Cao, Kim-Anh ; Rohart, Florian ; Gautier, Benoit ; Singh, Amrit. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005752.

Full description at Econpapers || Download paper

19
92015VDJtools: Unifying Post-analysis of T Cell Receptor Repertoires. (2015). Skorobogatova, Elena V ; Putintseva, Ekaterina V ; Bagaev, Dmitriy V ; Kirgizova, Vitalina I ; Chudakov, Dmitriy M ; Nazarov, Vadim I ; Bolotin, Dmitriy A ; Britanova, Olga V ; Pogorelyy, Mikhail V ; Shugay, Mikhail ; Turchaninova, Maria A ; Zvyagin, Ivan V. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004503.

Full description at Econpapers || Download paper

16
102006Cooperation Prevails When Individuals Adjust Their Social Ties. (2006). Lenaerts, Tom ; Pacheco, Jorge M ; Santos, Francisco C. In: PLOS Computational Biology. RePEc:plo:pcbi00:0020140.

Full description at Econpapers || Download paper

16
112017Fast online deconvolution of calcium imaging data. (2017). Zhou, Pengcheng ; Paninski, Liam ; Friedrich, Johannes. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005423.

Full description at Econpapers || Download paper

15
122012Evolutionary Game Theory and Social Learning Can Determine How Vaccine Scares Unfold. (2012). Bhattacharyya, Samit ; Bauch, Chris T. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002452.

Full description at Econpapers || Download paper

15
132020Practical considerations for measuring the effective reproductive number, Rt. (2020). de Salazar, Pablo M ; Munday, James D ; Bosse, Nikos I ; Hay, James A ; Stadler, Tanja ; Lipsitch, Marc ; Wallinga, Jacco ; Meakin, Sophie ; McGough, Lauren ; Baskerville, Edward B ; Funk, Sebastian ; White, Laura F ; Tedijanto, Christine ; Bonhoeffer, Sebastian ; Joshi, Keya ; Cobey, Sarah ; Sherrat, Katharine ; Abbott, Sam ; Gostic, Katelyn M ; Thompson, Robin N ; Hellewell, Joel ; Niehus, Rene ; Scire, Jeremie ; Kahn, Rebecca ; Huisman, Jana S. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008409.

Full description at Econpapers || Download paper

13
142021Evaluating epidemic forecasts in an interval format. (2021). Gneiting, Tilmann ; Reich, Nicholas G ; Bracher, Johannes ; Ray, Evan L. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008618.

Full description at Econpapers || Download paper

13
152016Reinforcement Learning Explains Conditional Cooperation and Its Moody Cousin. (2016). Horita, Yutaka ; Ezaki, Takahiro ; Masuda, Naoki ; Takezawa, Masanori. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005034.

Full description at Econpapers || Download paper

13
162015Sparse and Compositionally Robust Inference of Microbial Ecological Networks. (2015). Bonneau, Richard A ; Blaser, Martin J ; Miraldi, Emily R ; Littman, Dan R ; Muller, Christian L ; Kurtz, Zachary D. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004226.

Full description at Econpapers || Download paper

12
172014A Toolbox for Representational Similarity Analysis. (2014). Kriegeskorte, Nikolaus ; Su, LI ; Nili, Hamed ; Wingfield, Cai ; Walther, Alexander ; Marslen-Wilson, William. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003553.

Full description at Econpapers || Download paper

11
182010A Bayesian Framework to Account for Complex Non-Genetic Factors in Gene Expression Levels Greatly Increases Power in eQTL Studies. (2010). Durbin, Richard ; Stegle, Oliver ; Parts, Leopold ; Winn, John. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000770.

Full description at Econpapers || Download paper

11
192017Mindboggling morphometry of human brains. (2017). Stavsky, Eliezer ; Neto, Elias Chaibub ; Rossa, Brian ; Klein, Arno ; Keshavan, Anisha ; Hame, Yrjo ; Ghosh, Satrajit S ; Lee, Noah ; Reuter, Martin ; Giard, Joachim ; Bao, Forrest S. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005350.

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10
202010Dynamics and Control of Diseases in Networks with Community Structure. (2010). Salathe, Marcel ; Jones, James H. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000736.

Full description at Econpapers || Download paper

10
212013Approximate Bayesian Computation. (2013). Foll, Matthieu ; Corander, Jukka ; Numminen, Elina ; Dessimoz, Christophe ; Busetto, Alberto Giovanni ; Sunnker, Mikael. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002803.

Full description at Econpapers || Download paper

9
222016Cytofkit: A Bioconductor Package for an Integrated Mass Cytometry Data Analysis Pipeline. (2016). Chan-Lau, Jorge ; Poidinger, Michael ; Chen, Jinmiao ; Newell, Evan W ; Wong, Michael Thomas. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005112.

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8
232014VBA: A Probabilistic Treatment of Nonlinear Models for Neurobiological and Behavioural Data. (2014). Adam, Vincent ; Rigoux, Lionel ; Daunizeau, Jean. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003441.

Full description at Econpapers || Download paper

8
242016MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data. (2016). El-Hadidi, Mohamed ; Flade, Isabell ; Ruscheweyh, Hans-Joachim ; Huson, Daniel H ; Gorska, Anna ; Mitra, Suparna ; Beier, Sina ; Tappu, Rewati. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004957.

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8
252020Systems biology informed deep learning for inferring parameters and hidden dynamics. (2020). Raissi, Maziar ; Lu, LU ; Em, George ; Yazdani, Alireza. In: PLOS Computational Biology. RePEc:plo:pcbi00:1007575.

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8
262007Universally Sloppy Parameter Sensitivities in Systems Biology Models. (2007). Brown, Kevin S ; Waterfall, Joshua J ; Sethna, James P ; Casey, Fergal P ; Myers, Christopher R ; Gutenkunst, Ryan N. In: PLOS Computational Biology. RePEc:plo:pcbi00:0030189.

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272016Machine Learning Meta-analysis of Large Metagenomic Datasets: Tools and Biological Insights. (2016). Segata, Nicola ; Waldron, Levi ; Malik, Faizan ; Pasolli, Edoardo ; Truong, Duy Tin. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004977.

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282011Is My Network Module Preserved and Reproducible?. (2011). Horvath, Steve ; Luo, Rui ; Langfelder, Peter ; Oldham, Michael C. In: PLOS Computational Biology. RePEc:plo:pcbi00:1001057.

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292010Comparing Families of Dynamic Causal Models. (2010). Rosa, Maria J ; Stephan, Klaas E ; Friston, Karl J ; Daunizeau, Jean ; Leff, Alex P ; Penny, Will D ; Schofield, Thomas M. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000709.

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302016Efficient Coalescent Simulation and Genealogical Analysis for Large Sample Sizes. (2016). Kelleher, Jerome ; McVean, Gilean ; Etheridge, Alison M. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004842.

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312014Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible. (2014). Holmes, Susan ; McMurdie, Paul J. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003531.

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322021Generating functional protein variants with variational autoencoders. (2021). Couairon, Guillaume ; Depardieu, Florence ; Bikard, David ; Chen, Arthur ; Hawkins-Hooker, Alex ; Baur, Sebastien. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008736.

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332021MAUI (MBI Analysis User Interface)—An image processing pipeline for Multiplexed Mass Based Imaging. (2021). Keren, Leeat ; Oliveria, John-Paul ; Milo, Idan ; Mrdjen, Dunja ; Baranski, Alex ; Greenbaum, Shirley ; Angelo, Michael. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008887.

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342016Neural Population Dynamics during Reaching Are Better Explained by a Dynamical System than Representational Tuning. (2016). Michaels, Jonathan A ; Scherberger, Hansjorg ; Dann, Benjamin. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005175.

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352018Sequence determinants of protein phase behavior from a coarse-grained model. (2018). Dignon, Gregory L ; Zheng, Wenwei ; Best, Robert B ; Kim, Young C ; Mittal, Jeetain. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005941.

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362015Asymmetric Evolutionary Games. (2015). Hauert, Christoph ; McAvoy, Alex. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004349.

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372014Enhanced Regulatory Sequence Prediction Using Gapped k-mer Features. (2014). Mohammad-Noori, Morteza ; Beer, Michael A ; Ghandi, Mahmoud ; Lee, Dongwon. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003711.

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382018Prediction of infectious disease epidemics via weighted density ensembles. (2018). Reich, Nicholas G ; Ray, Evan L. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005910.

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392015The Effect of Incentives and Meta-incentives on the Evolution of Cooperation. (2015). Sasaki, Tatsuya ; Okada, Isamu ; Yamamoto, Hitoshi ; Toriumi, Fujio. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004232.

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402018Community-based benchmarking improves spike rate inference from two-photon calcium imaging data. (2018). Bethge, Matthias ; Froudarakis, Emmanouil ; Deneux, Thomas ; Pachitariu, Marius ; Ringach, Dario ; Gerhard, Stephan ; Rogerson, Luke E ; Bolte, Ben ; Turaga, Srinivas C ; Theis, Lucas ; Speiser, Artur ; Friedrich, Rainer W ; Paninski, Liam ; Tolias, Andreas S ; Berens, Philipp ; Harris, Kenneth D ; Rupprecht, Peter ; Mineault, Patrick ; Freeman, Jeremy ; Chenkov, Nikolay ; Stone, Jasmine ; Machado, Timothy A ; Sofroniew, Nicolas J ; Macke, Jakob H ; McColgan, Thomas ; Roson, Miroslav Roman ; Reimer, Jacob ; Euler, Thomas. In: PLOS Computational Biology. RePEc:plo:pcbi00:1006157.

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412019Evolutionary multiplayer games on graphs with edge diversity. (2019). Su, QI ; Wang, Long ; Zhou, Lei. In: PLOS Computational Biology. RePEc:plo:pcbi00:1006947.

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422013Consistent Estimation of Gibbs Energy Using Component Contributions. (2013). Milo, Ron ; Haraldsdottir, Hulda S ; Noor, Elad. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003098.

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432014Evolution of All-or-None Strategies in Repeated Public Goods Dilemmas. (2014). Pinheiro, Flávio ; Vasconcelos, Vitor V ; Pacheco, Jorge M ; Santos, Francisco C. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003945.

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442014Classical Mathematical Models for Description and Prediction of Experimental Tumor Growth. (2014). Hlatky, Lynn ; Lamont, Clare ; Tracz, Amanda ; Beheshti, Afshin ; Benzekry, Sebastien ; Hahnfeldt, Philip. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003800.

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452020Ten simple rules for building an antiracist lab. (2020). Chaudhary, Bala V ; Berhe, Asmeret Asefaw. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008210.

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462014BEAST 2: A Software Platform for Bayesian Evolutionary Analysis. (2014). Xie, Dong ; Wu, Chieh-Hsi ; Rambaut, Andrew ; Suchard, Marc A ; Drummond, Alexei J ; Khnert, Denise ; Bouckaert, Remco ; Vaughan, Tim ; Heled, Joseph. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003537.

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472019Hierarchical Bayesian inference for concurrent model fitting and comparison for group studies. (2019). Heskes, Tom ; Piray, Payam ; Daw, Nathaniel D ; Frank, Michael J ; Dezfouli, Amir. In: PLOS Computational Biology. RePEc:plo:pcbi00:1007043.

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482008Nonnegative Matrix Factorization: An Analytical and Interpretive Tool in Computational Biology. (2008). Devarajan, Karthik. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000029.

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492014Fast Reconstruction of Compact Context-Specific Metabolic Network Models. (2014). Sauter, Thomas ; Vlassis, Nikos ; Pacheco, Maria Pires. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003424.

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502017Predictive representations can link model-based reinforcement learning to model-free mechanisms. (2017). Gershman, Samuel J ; Daw, Nathaniel D ; Botvinick, Matthew M ; Momennejad, Ida ; Russek, Evan M. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005768.

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