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Citation Profile [Updated: 2023-11-03 08:28:08]
5 Years H Index
19
Impact Factor (IF)
0.14
5 Years IF
0.17
Data available in this report

[Raw data] [50 most cited papers] [50 most relevant papers] [cites used to compute IF] [Recent citations ][Frequent citing series ] [more data in EconPapers] [trace new citations] [Missing citations? Add them now] [Incorrect content? Let us know]

Main indicators
Raw Data

 

IF AIF CIF IF5 DOC CDO CIT NCI CCU D2Y C2Y D5Y C5Y SC %SC CiY II AII
2005 0 0.5 0 0 13 13 35 0 0 0 0 0 0.23
2006 0.38 0.5 0.14 0.38 38 51 174 7 7 13 5 13 5 7 100 2 0.05 0.22
2007 0.25 0.46 0.23 0.25 64 115 192 26 33 51 13 51 13 23 88.5 3 0.05 0.2
2008 0.23 0.49 0.14 0.21 90 205 212 29 62 102 23 115 24 18 62.1 2 0.02 0.23
2009 0.16 0.47 0.13 0.15 102 307 280 41 103 154 24 205 31 28 68.3 3 0.03 0.24
2010 0.2 0.48 0.16 0.17 119 426 429 69 172 192 38 307 53 43 62.3 3 0.03 0.21
2011 0.2 0.52 0.19 0.2 128 554 342 106 278 221 45 413 83 44 41.5 7 0.05 0.24
2012 0.25 0.52 0.23 0.23 142 696 225 163 441 247 62 503 117 65 39.9 8 0.06 0.22
2013 0.21 0.56 0.25 0.25 161 857 285 216 657 270 56 581 147 89 41.2 7 0.04 0.24
2014 0.14 0.55 0.2 0.19 196 1053 343 209 866 303 42 652 123 116 55.5 6 0.03 0.23
2015 0.17 0.55 0.19 0.17 208 1261 386 242 1108 357 60 746 127 134 55.4 6 0.03 0.23
2016 0.16 0.53 0.17 0.14 187 1448 253 247 1355 404 63 835 113 146 59.1 10 0.05 0.21
2017 0.17 0.54 0.19 0.16 213 1661 243 316 1671 395 68 894 142 192 60.8 7 0.03 0.22
2018 0.13 0.56 0.15 0.14 182 1843 166 275 1946 400 53 965 136 116 42.2 4 0.02 0.24
2019 0.17 0.58 0.18 0.16 240 2083 136 384 2330 395 67 986 161 231 60.2 7 0.03 0.23
2020 0.13 0.7 0.18 0.16 285 2368 146 423 2753 422 53 1030 160 195 46.1 19 0.07 0.33
2021 0.14 0.87 0.16 0.15 342 2710 95 438 3191 525 73 1107 169 100 22.8 15 0.04 0.32
2022 0.14 1 0.2 0.17 78 2788 2 558 3749 627 87 1262 211 11 2 3 0.04 0.31
IF: Two years Impact Factor: C2Y / D2Y
AIF: Average Impact Factor for all series in RePEc in year y
CIF: Cumulative impact factor
IF5: Five years Impact Factor: C5Y / D5Y
DOC: Number of documents published in year y
CDO: Cumulative number of documents published until year y
CIT: Number of citations to papers published in year y
NCI: Number of citations in year y
CCU: Cumulative number of citations to papers published until year y
D2Y: Number of articles published in y-1 plus y-2
C2Y: Cites in y to articles published in y-1 plus y-2
D5Y: Number of articles published in y-1 until y-5
C5Y: Cites in y to articles published in y-1 until y-5
SC: selft citations in y to articles published in y-1 plus y-2
%SC: Percentage of selft citations in y to articles published in y-1 plus y-2
CiY: Cites in year y to documents published in year y
II: Immediacy Index: CiY / Documents.
AII: Average Immediacy Index for series in RePEc in year y
50 most cited documents in this series
#YearTitleCited
12010Evolutionary Establishment of Moral and Double Moral Standards through Spatial Interactions. (2010). Szabo, Gyorgy ; Perc, Matja ; Szolnoki, Attila ; Helbing, Dirk. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000758.

Full description at Econpapers || Download paper

76
22006Cooperation Prevails When Individuals Adjust Their Social Ties. (2006). Lenaerts, Tom ; Pacheco, Jorge M ; Santos, Francisco C. In: PLOS Computational Biology. RePEc:plo:pcbi00:0020140.

Full description at Econpapers || Download paper

76
32010Game Theory of Social Distancing in Response to an Epidemic. (2010). Reluga, Timothy C. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000793.

Full description at Econpapers || Download paper

49
42010Dynamics and Control of Diseases in Networks with Community Structure. (2010). Jones, James H ; Salathe, Marcel. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000736.

Full description at Econpapers || Download paper

47
52013Software for Computing and Annotating Genomic Ranges. (2013). Carey, Vincent J ; Morgan, Martin T ; Gentleman, Robert ; Carlson, Marc ; Aboyoun, Patrick ; Pages, Herve ; Huber, Wolfgang ; Lawrence, Michael. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003118.

Full description at Econpapers || Download paper

40
62007Universally Sloppy Parameter Sensitivities in Systems Biology Models. (2007). Sethna, James P ; Myers, Christopher R ; Brown, Kevin S ; Casey, Fergal P ; Waterfall, Joshua J ; Gutenkunst, Ryan N. In: PLOS Computational Biology. RePEc:plo:pcbi00:0030189.

Full description at Econpapers || Download paper

39
72018Punishment and inspection for governing the commons in a feedback-evolving game. (2018). Szolnoki, Attila ; Chen, Xiaojie. In: PLOS Computational Biology. RePEc:plo:pcbi00:1006347.

Full description at Econpapers || Download paper

38
82015MAGMA: Generalized Gene-Set Analysis of GWAS Data. (2015). Posthuma, Danielle ; Heskes, Tom ; Mooij, Joris M ; de Leeuw, Christiaan A. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004219.

Full description at Econpapers || Download paper

32
92012Evolutionary Game Theory and Social Learning Can Determine How Vaccine Scares Unfold. (2012). Bhattacharyya, Samit ; Bauch, Chris T. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002452.

Full description at Econpapers || Download paper

29
102013Approximate Bayesian Computation. (2013). Dessimoz, Christophe ; Foll, Matthieu ; Corander, Jukka ; Numminen, Elina ; Busetto, Alberto Giovanni ; Sunnker, Mikael. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002803.

Full description at Econpapers || Download paper

25
112015Sparse and Compositionally Robust Inference of Microbial Ecological Networks. (2015). Bonneau, Richard A ; Blaser, Martin J ; Littman, Dan R ; Miraldi, Emily R ; Muller, Christian L ; Kurtz, Zachary D. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004226.

Full description at Econpapers || Download paper

24
122014Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible. (2014). Holmes, Susan ; McMurdie, Paul J. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003531.

Full description at Econpapers || Download paper

23
132009Semantic Similarity in Biomedical Ontologies. (2009). Couto, Francisco M ; Lord, Phillip ; Falco, Andre O ; Faria, Daniel ; Pesquita, Catia. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000443.

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22
142011Accelerated Profile HMM Searches. (2011). Eddy, Sean R. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002195.

Full description at Econpapers || Download paper

22
152017OpenMM 7: Rapid development of high performance algorithms for molecular dynamics. (2017). Harrigan, Matthew P ; Simmonett, Andrew C ; Wang, Lee-Ping ; Beauchamp, Kyle A ; Zhao, Yutong ; McGibbon, Robert T ; Chodera, John D ; Pande, Vijay S ; Swails, Jason ; Brooks, Bernard R ; Eastman, Peter ; Wiewiora, Rafal P ; Stern, Chaya D. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005659.

Full description at Econpapers || Download paper

22
162011Mitigation Strategies for Pandemic Influenza A: Balancing Conflicting Policy Objectives. (2011). Anderson, Roy M ; Heesterbeek, Hans ; Klinkenberg, Don ; Hollingsworth, Deirdre T. In: PLOS Computational Biology. RePEc:plo:pcbi00:1001076.

Full description at Econpapers || Download paper

21
172009Broadband Criticality of Human Brain Network Synchronization. (2009). Bullmore, ED ; Christensen, Soren R ; Smith, Marie L ; Kitzbichler, Manfred G. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000314.

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20
182020Practical considerations for measuring the effective reproductive number, Rt. (2020). Bonhoeffer, Sebastian ; Hay, James A ; Scire, Jeremie ; Niehus, Rene ; Huisman, Jana S ; Kahn, Rebecca ; White, Laura F ; Tedijanto, Christine ; Thompson, Robin N ; Joshi, Keya ; Sherrat, Katharine ; Abbott, Sam ; Cobey, Sarah ; Bosse, Nikos I ; Baskerville, Edward B ; Lipsitch, Marc ; Munday, James D ; McGough, Lauren ; Funk, Sebastian ; Meakin, Sophie ; Gostic, Katelyn M ; Wallinga, Jacco ; Hellewell, Joel ; Stadler, Tanja ; de Salazar, Pablo M. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008409.

Full description at Econpapers || Download Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples. (2009). Pop, Mihai ; Nagarajan, Niranjan ; White, James Robert. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000352.

Full description at Econpapers || Download paper

20
202014Evolutionary Game Dynamics in Populations with Heterogenous Structures. (2014). Hauert, Christoph ; Fu, Feng ; Maciejewski, Wes. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003567.

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19
212014VBA: A Probabilistic Treatment of Nonlinear Models for Neurobiological and Behavioural Data. (2014). Rigoux, Lionel ; Adam, Vincent ; Daunizeau, Jean. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003441.

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19
222011How Structure Determines Correlations in Neuronal Networks. (2011). Rotter, Stefan ; Cardanobile, Stefano ; Staude, Benjamin ; Pernice, Volker. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002059.

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18
232010Associating Genes and Protein Complexes with Disease via Network Propagation. (2010). Sharan, Roded ; Shlomi, Tomer ; Ruppin, Eytan ; Magger, Oded ; Vanunu, Oron. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000641.

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17
242009Population Structure Induces a Symmetry Breaking Favoring the Emergence of Cooperation. (2009). Pinheiro, Flávio ; Santos, Francisco C ; Pacheco, Jorge M. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000596.

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17
252010Comparing Families of Dynamic Causal Models. (2010). Leff, Alex P ; Schofield, Thomas M ; Friston, Karl J ; Rosa, Maria J ; Daunizeau, Jean ; Stephan, Klaas E ; Penny, Will D. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000709.

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17
262008Support Vector Machines and Kernels for Computational Biology. (2008). Ratsch, Gunnar ; Scholkopf, Bernhard ; Sonnenburg, Soren ; Ong, Cheng Soon ; Ben-Hur, Asa. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000173.

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16
272014Comparison of Filtering Methods for the Modeling and Retrospective Forecasting of Influenza Epidemics. (2014). Shaman, Jeffrey ; Karspeck, Alicia ; Yang, Wan. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003583.

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16
282011Risk, Unexpected Uncertainty, and Estimation Uncertainty: Bayesian Learning in Unstable Settings. (2011). Bossaerts, Peter ; Payzan-Lenestour, Elise. In: PLOS Computational Biology. RePEc:plo:pcbi00:1001048.

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16
292007Machine Learning and Its Applications to Biology. (2007). Drghici, Sorin ; Romero, Roberto ; Chen, Xue-Wen ; Carey, Vincent J ; Tarca, Adi L. In: PLOS Computational Biology. RePEc:plo:pcbi00:0030116.

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16
302016Efficient Coalescent Simulation and Genealogical Analysis for Large Sample Sizes. (2016). McVean, Gilean ; Etheridge, Alison M ; Kelleher, Jerome. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004842.

Full description at Econpapers || Download paper

15
312014A Toolbox for Representational Similarity Analysis. (2014). Kriegeskorte, Nikolaus ; Marslen-Wilson, William ; Su, LI ; Walther, Alexander ; Wingfield, Cai ; Nili, Hamed. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003553.

Full description at Econpapers || Download paper

15
322014On the Origins of Suboptimality in Human Probabilistic Inference. (2014). Wolpert, Daniel M ; Vijayakumar, Sethu ; Acerbi, Luigi. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003661.

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15
332006Nonoptimal Component Placement, but Short Processing Paths, due to Long-Distance Projections in Neural Systems. (2006). Hilgetag, Claus C ; Kaiser, Marcus . In: PLOS Computational Biology. RePEc:plo:pcbi00:0020095.

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14
342010Probability Matching as a Computational Strategy Used in Perception. (2010). Shams, Ladan ; Beierholm, Ulrik R ; Wozny, David R. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000871.

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14
352005Ten Simple Rules for Getting Published. (2005). Bourne, Philip E. In: PLOS Computational Biology. RePEc:plo:pcbi00:0010057.

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14
362008Hierarchical Models in the Brain. (2008). Friston, Karl. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000211.

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14
372010Parameter Estimation and Model Selection in Computational Biology. (2010). Khammash, Mustafa ; Lillacci, Gabriele. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000696.

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14
382015Flexible Modeling of Epidemics with an Empirical Bayes Framework. (2015). Rosenfeld, Roni ; Tibshirani, Ryan J ; Hyun, Sangwon ; Farrow, David C ; Brooks, Logan C. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004382.

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14
392020Estimation of country-level basic reproductive ratios for novel Coronavirus (SARS-CoV-2/COVID-19) using synthetic contact matrices. (2020). Keeling, Matt J ; Hilton, Joe. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008031.

Full description at Econpapers || Download paper

14
402015The Effect of Incentives and Meta-incentives on the Evolution of Cooperation. (2015). Sasaki, Tatsuya ; Toriumi, Fujio ; Yamamoto, Hitoshi ; Okada, Isamu. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004232.

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13
412017Fast online deconvolution of calcium imaging data. (2017). Paninski, Liam ; Zhou, Pengcheng ; Friedrich, Johannes. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005423.

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13
422009Pairwise Maximum Entropy Models for Studying Large Biological Systems: When They Can Work and When They Cant. (2009). Latham, Peter E ; Nirenberg, Sheila ; Roudi, Yasser. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000380.

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13
432016MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data. (2016). Tappu, Rewati ; Ruscheweyh, Hans-Joachim ; Mitra, Suparna ; El-Hadidi, Mohamed ; Gorska, Anna ; Flade, Isabell ; Beier, Sina ; Huson, Daniel H. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004957.

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13
442015Emergence of Shared Intentionality Is Coupled to the Advance of Cumulative Culture. (2015). Newton, Jonathan ; Angus, Simon. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004587.

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13
452015The Sense of Confidence during Probabilistic Learning: A Normative Account. (2015). Dehaene, Stanislas ; Schlunegger, Daniel ; Meyniel, Florent. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004305.

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13
462015Most Undirected Random Graphs Are Amplifiers of Selection for Birth-Death Dynamics, but Suppressors of Selection for Death-Birth Dynamics. (2015). Traulsen, Arne ; Hindersin, Laura. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004437.

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12
472011Simulated Epidemics in an Empirical Spatiotemporal Network of 50,185 Sexual Contacts. (2011). Rocha, Luis ; Holme, Petter ; Liljeros, Fredrik ; Luis , . In: PLOS Computational Biology. RePEc:plo:pcbi00:1001109.

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12
482008Game Theory of Mind. (2008). Friston, Karl J ; Dolan, Ray J ; Yoshida, Wako. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000254.

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12
492013Epidemic Spread on Weighted Networks. (2013). Alizon, Samuel ; Moslonka-Lefebvre, Mathieu ; Kamp, Christel. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003352.

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12
502015Asymmetric Evolutionary Games. (2015). Hauert, Christoph ; McAvoy, Alex. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004349.

Full description at Econpapers || Download paper

11
50 most relevant documents in this series (papers most cited in the last two years)
#YearTitleCited
12013Software for Computing and Annotating Genomic Ranges. (2013). Carey, Vincent J ; Morgan, Martin T ; Gentleman, Robert ; Carlson, Marc ; Aboyoun, Patrick ; Pages, Herve ; Huber, Wolfgang ; Lawrence, Michael. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003118.

Full description at Econpapers || Download paper

37
22010Evolutionary Establishment of Moral and Double Moral Standards through Spatial Interactions. (2010). Szabo, Gyorgy ; Perc, Matja ; Szolnoki, Attila ; Helbing, Dirk. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000758.

Full description at Econpapers || Download paper

29
32010Game Theory of Social Distancing in Response to an Epidemic. (2010). Reluga, Timothy C. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000793.

Full description at Econpapers || Download paper

28
42015MAGMA: Generalized Gene-Set Analysis of GWAS Data. (2015). Posthuma, Danielle ; Heskes, Tom ; Mooij, Joris M ; de Leeuw, Christiaan A. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004219.

Full description at Econpapers || Download paper

28
52018Punishment and inspection for governing the commons in a feedback-evolving game. (2018). Szolnoki, Attila ; Chen, Xiaojie. In: PLOS Computational Biology. RePEc:plo:pcbi00:1006347.

Full description at Econpapers || Download paper

24
62017OpenMM 7: Rapid development of high performance algorithms for molecular dynamics. (2017). Harrigan, Matthew P ; Simmonett, Andrew C ; Wang, Lee-Ping ; Beauchamp, Kyle A ; Zhao, Yutong ; McGibbon, Robert T ; Chodera, John D ; Pande, Vijay S ; Swails, Jason ; Brooks, Bernard R ; Eastman, Peter ; Wiewiora, Rafal P ; Stern, Chaya D. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005659.

Full description at Econpapers || Download paper

22
72006Cooperation Prevails When Individuals Adjust Their Social Ties. (2006). Lenaerts, Tom ; Pacheco, Jorge M ; Santos, Francisco C. In: PLOS Computational Biology. RePEc:plo:pcbi00:0020140.

Full description at Econpapers || Download paper

18
82014Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible. (2014). Holmes, Susan ; McMurdie, Paul J. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003531.

Full description at Econpapers || Download paper

17
92015Sparse and Compositionally Robust Inference of Microbial Ecological Networks. (2015). Bonneau, Richard A ; Blaser, Martin J ; Littman, Dan R ; Miraldi, Emily R ; Muller, Christian L ; Kurtz, Zachary D. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004226.

Full description at Econpapers || Download paper

16
102020Practical considerations for measuring the effective reproductive number, Rt. (2020). Bonhoeffer, Sebastian ; Hay, James A ; Scire, Jeremie ; Niehus, Rene ; Huisman, Jana S ; Kahn, Rebecca ; White, Laura F ; Tedijanto, Christine ; Thompson, Robin N ; Joshi, Keya ; Sherrat, Katharine ; Abbott, Sam ; Cobey, Sarah ; Bosse, Nikos I ; Baskerville, Edward B ; Lipsitch, Marc ; Munday, James D ; McGough, Lauren ; Funk, Sebastian ; Meakin, Sophie ; Gostic, Katelyn M ; Wallinga, Jacco ; Hellewell, Joel ; Stadler, Tanja ; de Salazar, Pablo M. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008409.

Full description at Econpapers || Download Evolutionary Game Theory and Social Learning Can Determine How Vaccine Scares Unfold. (2012). Bhattacharyya, Samit ; Bauch, Chris T. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002452.

Full description at Econpapers || Download paper

15
122016MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data. (2016). Tappu, Rewati ; Ruscheweyh, Hans-Joachim ; Mitra, Suparna ; El-Hadidi, Mohamed ; Gorska, Anna ; Flade, Isabell ; Beier, Sina ; Huson, Daniel H. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004957.

Full description at Econpapers || Download paper

12
132017Fast online deconvolution of calcium imaging data. (2017). Paninski, Liam ; Zhou, Pengcheng ; Friedrich, Johannes. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005423.

Full description at Econpapers || Download paper

11
142020Estimation of country-level basic reproductive ratios for novel Coronavirus (SARS-CoV-2/COVID-19) using synthetic contact matrices. (2020). Keeling, Matt J ; Hilton, Joe. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008031.

Full description at Econpapers || Download paper

11
152016Efficient Coalescent Simulation and Genealogical Analysis for Large Sample Sizes. (2016). McVean, Gilean ; Etheridge, Alison M ; Kelleher, Jerome. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004842.

Full description at Econpapers || Download paper

11
162021Multivariable association discovery in population-scale meta-omics studies. (2021). Huttenhower, Curtis ; Ren, Boyu ; Bravo, Hector Corrada ; Weingart, George ; Franzosa, Eric A ; Tickle, Timothy L ; Paulson, Joseph N ; Nguyen, Long H ; Waldron, Levi ; Zhang, Yancong ; Lu, Yiren ; Ma, Siyuan ; Subramanian, Ayshwarya ; McIver, Lauren J ; Wilkinson, Jeremy E ; Rahnavard, Ali ; Thompson, Kelsey N ; Mallick, Himel ; Chatterjee, Suvo ; Schwager, Emma H. In: PLOS Computational Biology. RePEc:plo:pcbi00:1009442.

Full description at Econpapers || Download Approximate Bayesian Computation. (2013). Dessimoz, Christophe ; Foll, Matthieu ; Corander, Jukka ; Numminen, Elina ; Busetto, Alberto Giovanni ; Sunnker, Mikael. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002803.

Full description at Econpapers || Download paper

10
182011Mitigation Strategies for Pandemic Influenza A: Balancing Conflicting Policy Objectives. (2011). Anderson, Roy M ; Heesterbeek, Hans ; Klinkenberg, Don ; Hollingsworth, Deirdre T. In: PLOS Computational Biology. RePEc:plo:pcbi00:1001076.

Full description at Econpapers || Download paper

9
192015Asymmetric Evolutionary Games. (2015). Hauert, Christoph ; McAvoy, Alex. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004349.

Full description at Econpapers || Download paper

8
202016Cytofkit: A Bioconductor Package for an Integrated Mass Cytometry Data Analysis Pipeline. (2016). Chan-Lau, Jorge ; Chen, Jin Miao ; Poidinger, Michael ; Newell, Evan W ; Wong, Michael Thomas. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005112.

Full description at Econpapers || Download paper

8
212019Evolutionary multiplayer games on graphs with edge diversity. (2019). Wang, Long ; Zhou, Lei ; Su, QI. In: PLOS Computational Biology. RePEc:plo:pcbi00:1006947.

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7
222009Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples. (2009). Pop, Mihai ; Nagarajan, Niranjan ; White, James Robert. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000352.

Full description at Econpapers || Download paper

7
232015VDJtools: Unifying Post-analysis of T Cell Receptor Repertoires. (2015). Zvyagin, Ivan V ; Nazarov, Vadim I ; Pogorelyy, Mikhail V ; Putintseva, Ekaterina V ; Britanova, Olga V ; Bolotin, Dmitriy A ; Turchaninova, Maria A ; Chudakov, Dmitriy M ; Bagaev, Dmitriy V ; Skorobogatova, Elena V ; Shugay, Mikhail ; Kirgizov, Kirill I ; Kirgizova, Vitalina I. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004503.

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7
242011Accelerated Profile HMM Searches. (2011). Eddy, Sean R. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002195.

Full description at Econpapers || Download paper

7
252021Evaluating epidemic forecasts in an interval format. (2021). Reich, Nicholas G ; Gneiting, Tilmann ; Ray, Evan L ; Bracher, Johannes. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008618.

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7
262016Reinforcement Learning Explains Conditional Cooperation and Its Moody Cousin. (2016). Masuda, Naoki ; Takezawa, Masanori ; Horita, Yutaka ; Ezaki, Takahiro. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005034.

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7
272017Accurate De Novo Prediction of Protein Contact Map by Ultra-Deep Learning Model. (2017). Xu, Jinbo ; Zhang, Renyu ; Li, Zhen ; Sun, Siqi ; Wang, Sheng. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005324.

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6
282014A Toolbox for Representational Similarity Analysis. (2014). Kriegeskorte, Nikolaus ; Marslen-Wilson, William ; Su, LI ; Walther, Alexander ; Wingfield, Cai ; Nili, Hamed. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003553.

Full description at Econpapers || Download paper

6
292010Dynamics and Control of Diseases in Networks with Community Structure. (2010). Jones, James H ; Salathe, Marcel. In: PLOS Computational Biology. RePEc:plo:pcbi00:1000736.

Full description at Econpapers || Download paper

6
302011Simulated Epidemics in an Empirical Spatiotemporal Network of 50,185 Sexual Contacts. (2011). Rocha, Luis ; Holme, Petter ; Liljeros, Fredrik ; Luis , . In: PLOS Computational Biology. RePEc:plo:pcbi00:1001109.

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6
312017Mindboggling morphometry of human brains. (2017). Reuter, Martin ; Rossa, Brian ; Lee, Noah ; Stavsky, Eliezer ; Hame, Yrjo ; Giard, Joachim ; Bao, Forrest S ; Ghosh, Satrajit S ; Klein, Arno ; Keshavan, Anisha ; Neto, Elias Chaibub. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005350.

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322020Systems biology informed deep learning for inferring parameters and hidden dynamics. (2020). Em, George ; Raissi, Maziar ; Lu, LU ; Yazdani, Alireza . In: PLOS Computational Biology. RePEc:plo:pcbi00:1007575.

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332012Automated Tracking of Whiskers in Videos of Head Fixed Rodents. (2012). Myers, Eugene W ; Svoboda, Karel ; Peron, Simon ; Hires, Andrew ; Petreanu, Leopoldo ; Huber, Daniel ; O'Connor, Daniel H ; Clack, Nathan G. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002591.

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342018Astrocytic Kir4.1 channels and gap junctions account for spontaneous epileptic seizure. (2018). Wu, Ying ; Yu, Yuguo ; Chen, Liang ; Li, Jiajia ; Du, Mengmeng. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005877.

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352017On the stability and dynamics of stochastic spiking neuron models: Nonlinear Hawkes process and point process GLMs. (2017). Truccolo, Wilson ; Deger, Moritz ; Gerhard, Felipe . In: PLOS Computational Biology. RePEc:plo:pcbi00:1005390.

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362014VBA: A Probabilistic Treatment of Nonlinear Models for Neurobiological and Behavioural Data. (2014). Rigoux, Lionel ; Adam, Vincent ; Daunizeau, Jean. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003441.

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372019Ten simple rules towards healthier research labs. (2019). Maestre, Fernando T. In: PLOS Computational Biology. RePEc:plo:pcbi00:1006914.

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382021Spec2Vec: Improved mass spectral similarity scoring through learning of structural relationships. (2021). , Justin ; Rogers, Simon ; Diblen, Faruk ; Spaaks, Jurriaan H ; Verhoeven, Stefan ; Ridder, Lars ; Huber, Florian. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008724.

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392017Leveraging functional annotations in genetic risk prediction for human complex diseases. (2017). Zhao, Hongyu ; Xu, Xinran ; Fang, Fang ; Yang, Can ; Yao, Xinwei ; Powles, Ryan ; Lu, Qiongshi ; Hu, Yiming. In: PLOS Computational Biology. RePEc:plo:pcbi00:1005589.

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402019Ten quick tips for effective dimensionality reduction. (2019). Holmes, Susan ; Nguyen, Lan Huong. In: PLOS Computational Biology. RePEc:plo:pcbi00:1006907.

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412015Resting-State Temporal Synchronization Networks Emerge from Connectivity Topology and Heterogeneity. (2015). Corbetta, Maurizio ; Mantini, Dante ; Romani, Gian Luca ; Hagmann, Patric ; Deco, Gustavo ; Ponce-Alvarez, Adrian. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004100.

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422020Ten simple rules for building an antiracist lab. (2020). Berhe, Asmeret Asefaw ; Chaudhary, Bala V. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008210.

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432015Reputation Effects in Public and Private Interactions. (2015). Nowak, Martin A ; Iwasa, Yoh ; Ohtsuki, Hisashi. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004527.

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442021MAUI (MBI Analysis User Interface)—An image processing pipeline for Multiplexed Mass Based Imaging. (2021). Keren, Leeat ; Angelo, Michael ; Mrdjen, Dunja ; Oliveria, John-Paul ; Greenbaum, Shirley ; Milo, Idan ; Baranski, Alex. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008887.

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452015The Effect of Incentives and Meta-incentives on the Evolution of Cooperation. (2015). Sasaki, Tatsuya ; Toriumi, Fujio ; Yamamoto, Hitoshi ; Okada, Isamu. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004232.

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462013Practical Guidelines for the Comprehensive Analysis of ChIP-seq Data. (2013). Zhang, Jie ; Taslim, Cenny ; Madrigal, Pedro ; Liu, Tao ; Lefebvre, Celine ; Ladunga, Istvan ; Krajewski, Pawel ; Bailey, Timothy. In: PLOS Computational Biology. RePEc:plo:pcbi00:1003326.

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472020Recurrent neural networks can explain flexible trading of speed and accuracy in biological vision. (2020). Kriegeskorte, Nikolaus ; Charest, Ian ; Mehrer, Johannes ; Kietzmann, Tim C ; Spoerer, Courtney J. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008215.

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482016Evolution of Cooperation in Social Dilemmas on Complex Networks. (2016). Killingback, Timothy ; Iyer, Swami. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004779.

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492016Social Norms of Cooperation in Small-Scale Societies. (2016). Pacheco, Jorge M ; Santos, Francisco C. In: PLOS Computational Biology. RePEc:plo:pcbi00:1004709.

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502012Evolutionary Dynamics of Strategic Behavior in a Collective-Risk Dilemma. (2012). Traulsen, Arne ; Chakra, Maria Abou. In: PLOS Computational Biology. RePEc:plo:pcbi00:1002652.

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2022Local structure-function relationships in human brain networks across the lifespan. (2022). Betzel, Richard F ; Mii, Bratislav ; Slack, Jonah ; Faskowitz, Joshua ; Esfahlani, Farnaz Zamani. In: Nature Communications. RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-29770-y.

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2022Performance of early warning signals for disease re-emergence: A case study on COVID-19 data. (2022). Gonalves, Jorge ; Magni, Stefano ; Kemp, Franoise ; Proverbio, Daniele. In: PLOS Computational Biology. RePEc:plo:pcbi00:1009958.

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2022Graph-based autoencoder integrates spatial transcriptomics with chromatin images and identifies joint biomarkers for Alzheimer’s disease. (2022). Uhler, Caroline ; Shivashankar, G V ; Wang, Xiao ; Zhang, Xinyi. In: Nature Communications. RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-35233-1.

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2022Using deep learning to predict abdominal age from liver and pancreas magnetic resonance images. (2022). Patel, Chirag J ; Vincent, Theo ; Prost, Jean-Baptiste ; Collin, Sasha ; Diai, Samuel ; le Goallec, Alan. In: Nature Communications. RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-29525-9.

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2022Non-selective distribution of infectious disease prevention may outperform risk-based targeting. (2022). Casanova-Ferrer, Pau ; Bracci, Alberto ; Teixeira, Andreia Sofia ; Iacopini, Iacopo ; Steinegger, Benjamin ; Valdano, Eugenio ; Antonioni, Alberto. In: Nature Communications. RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-30639-3.

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2022Visual timing-tuned responses in human association cortices and response dynamics in early visual cortex. (2022). Paul, Jacob M ; Hendrikx, Evi ; Harvey, Ben M ; Stoep, Nathan ; Ackooij, Martijn. In: Nature Communications. RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-31675-9.

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2022Daylight saving time affects European mortality patterns. (2022). Ballester, Joan ; Rodo, Xavier ; Herrmann, Franois R ; Levy, Laurent ; Robine, Jean-Marie ; Rey, Gregoire ; Mendez, Raul Fernando ; Quijal-Zamorano, Marcos ; Achebak, Hicham. In: Nature Communications. RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-34704-9.

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2022Constructing neural network models from brain data reveals representational transformations linked to adaptive behavior. (2022). Ito, Takuya ; Cole, Michael W ; Schultz, Douglas H ; Laurent, Patryk ; Yang, Guangyu Robert. In: Nature Communications. RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-28323-7.

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2022Deep phenotyping and lifetime trajectories reveal limited effects of longevity regulators on the aging process in C57BL/6J mice. (2022). Nover, Lena L ; Wurst, Wolfgang ; da Silva-Buttkus, Patricia ; Aguilar-Pimentel, Juan Antonio ; Oestereicher, Manuela A ; Xie, Kan ; Calzada-Wack, Julia ; Amarie, Oana Veronica ; Klopstock, Thomas ; Fuchs, Helmut ; Liu, Dan ; Edwards, Cole A ; Holter, Sabine M ; Mock, Beverly A ; Scifo, Enzo ; Aziz, Ahmad ; Garrett, Lillian ; Klein-Rodewald, Tanja ; Spielmann, Nadine ; Cho, Yi-Li ; Salomoni, Paolo ; Busch, Dirk H ; Kramer, Michael ; Sanz-Moreno, Adrian ; Deng, Yushuang ; Gailus-Durner, Valerie ; Graw, Jochen ; Leuchtenberger, Stefanie ; Stoeger, Claudia ; Overkott, Clemens ; de Angelis, Martin Hrabe ; Georgopoulou, Christina ; Schmidt-
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2022Random networks are heterogeneous exhibiting a multi-scaling law. (2022). Miao, Qiguang ; Wang, Shuzhen ; Quan, Yining ; Che, Wanping ; Sun, Peng Gang. In: Physica A: Statistical Mechanics and its Applications. RePEc:eee:phsmap:v:587:y:2022:i:c:s0378437121007524.

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2022The spatiotemporal neural dynamics of object location representations in the human brain. (2022). Ciuffi, Caterina ; Graumann, Monika ; Cichy, Radoslaw M ; Roig, Gemma ; Dwivedi, Kshitij. In: Nature Human Behaviour. RePEc:nat:nathum:v:6:y:2022:i:6:d:10.1038_s41562-022-01302-0.

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2022Research on digital media animation control technology based on recurrent neural network using speech technology. (2022). Shabaz, Mohammad ; Sharma, Ashutosh ; Wang, Hui. In: International Journal of System Assurance Engineering and Management. RePEc:spr:ijsaem:v:13:y:2022:i:1:d:10.1007_s13198-021-01540-x.

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2022Inferring differential subcellular localisation in comparative spatial proteomics using BANDLE. (2022). Christopher, Josie A ; Breckels, Lisa M ; Colin, ; Crook, Oliver M ; Gatto, Laurent ; Lilley, Kathryn S. In: Nature Communications. RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-33570-9.

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2022Genomic epidemiology of Delta SARS-CoV-2 during transition from elimination to suppression in Aotearoa New Zealand. (2022). Douglas, Jordan ; Jelley, Lauren ; Geoghegan, Jemma L ; Ligt, Joep ; Hadfield, James ; Welch, David ; French, Nigel ; Huang, Sue ; McNeill, Andrea ; Winter, David. In: Nature Communications. RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-31784-5.

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2022Tracing the international arrivals of SARS-CoV-2 Omicron variants after Aotearoa New Zealand reopened its border. (2022). Douglas, Jordan ; French, Nigel ; Hadfield, James ; Ligt, Joep ; Welch, David ; Carr, Sam ; Bunce, Michael ; Winter, David ; McNeill, Andrea ; Geoghegan, Jemma L. In: Nature Communications. RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-34186-9.

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2022Placental multi-omics integration identifies candidate functional genes for birthweight. (2022). Lesseur, Corina ; Ouidir, Marion ; Chatterjee, Suvo ; Zeng, Xuehuo ; Tekola-Ayele, Fasil ; Wapner, Ronald ; Workalemahu, Tsegaselassie ; Marsit, Carmen J ; Tesfaye, Markos ; Chen, Jia ; Hao, KE. In: Nature Communications. RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-30007-1.

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2022Genomic epidemiology of SARS-CoV-2 under an elimination strategy in Hong Kong. (2022). , Carrie ; Gu, Haogao ; Dhanasekaran, Vijaykrishna ; Peiris, Malik ; Krishnan, Pavithra ; Cowling, Benjamin J ; Gurung, Shreya ; Leung, Gabriel M ; Wu, Joseph T ; Chu, Daniel K ; Edwards, Kimberly M ; Adam, Dillon C ; Xie, Ruopeng. In: Nature Communications. RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-28420-7.

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2022Incorporating temporal distribution of population-level viral load enables real-time estimation of COVID-19 transmission. (2022). Cheung, Justin K ; Bond, Helen S ; Wong, Jessica Y ; Cowling, Benjamin J ; Adam, Dillon C ; Leung, Gabriel M ; Wu, Peng ; Cobey, Sarah ; Tsang, Tim K ; Yang, Bingyi ; Ali, Sheikh Taslim ; Gao, Huizhi ; Ho, Faith. In: Nature Communications. RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-28812-9.

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2022Inferring time-varying generation time, serial interval, and incubation period distributions for COVID-19. (2022). Tsang, Tim K ; Du, Zhanwei ; Wang, Lin ; Xu, Xiao-Ke ; Lau, Yiu-Chung ; Chen, Dongxuan ; Ali, Sheikh Taslim ; Cowling, Benjamin J ; Wallinga, Jacco ; Wu, Peng. In: Nature Communications. RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-35496-8.

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2022Data-driven approach in a compartmental epidemic model to assess undocumented infections. (2022). Ferreira, Silvio C ; Cota, Wesley ; Costa, Guilherme S. In: Chaos, Solitons & Fractals. RePEc:eee:chsofr:v:163:y:2022:i:c:s0960077922007202.

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2022Assessing epidemic curves for evidence of superspreading. (2022). Friel, Nial ; Meagher, Joe. In: Journal of the Royal Statistical Society Series A. RePEc:bla:jorssa:v:185:y:2022:i:4:p:2179-2202.

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2022Estimation of reproduction numbers in real time: Conceptual and statistical challenges. (2022). Stage, Helena B ; Scarabel, Francesca ; Overton, Christopher E ; de Angelis, Daniela ; Blake, Joshua ; Consortium, Juniper ; Birrell, Paul J ; Read, Jonathan M ; Pellis, Lorenzo ; Keeling, Matt J ; House, Thomas A ; Hall, Ian ; Danon, Leon ; Brookspollock, Ellen. In: Journal of the Royal Statistical Society Series A. RePEc:bla:jorssa:v:185:y:2022:i:s1:p:s112-s130.

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2022The Social Divide of Social Distancing: Shelter-in-Place Behavior in Santiago During the Covid-19 Pandemic. (2022). Covarrubia, Julio ; Weintraub, Gabriel Y ; Olivares, Marcelo ; Lara, Eduardo ; Goic, Marcel ; Carranza, Aldo ; Basso, Leonardo J ; Jara, Natalia ; Escobedo, Cristian. In: Management Science. RePEc:inm:ormnsc:v:68:y:2022:i:3:p:2016-2027.

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2022Representing preorders with injective monotones. (2022). Hack, Pedro ; Braun, Daniel A ; Gottwald, Sebastian. In: Theory and Decision. RePEc:kap:theord:v:93:y:2022:i:4:d:10.1007_s11238-021-09861-w.

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2022Are epidemic growth rates more informative than reproduction numbers?. (2022). Donnelly, Christl A ; Thompson, Robin N ; Parag, Kris V. In: Journal of the Royal Statistical Society Series A. RePEc:bla:jorssa:v:185:y:2022:i:s1:p:s5-s15.

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2022Construction of a Forest Ecological Network Based on the Forest Ecological Suitability Index and the Morphological Spatial Pattern Method: A Case Study of Jindong Forest Farm in Hunan Province. (2022). Tang, Tao ; Li, Jiping ; Wang, Danmei ; Liao, Pengcheng. In: Sustainability. RePEc:gam:jsusta:v:14:y:2022:i:5:p:3082-:d:765470.

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2022Assessing impact of the COVID-19 pandemic on China’s TFP growth: Evidence from region-level data in 2020. (2022). Sheng, YU ; Chen, Moyu ; Cheng, Baodong ; Huang, Kainan. In: Economic Analysis and Policy. RePEc:eee:ecanpo:v:75:y:2022:i:c:p:362-377.

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2022Interval forecasts of weekly incident and cumulative COVID-19 mortality in the United States: A comparison of combining methods. (2022). Taylor, James W. In: PLOS ONE. RePEc:plo:pone00:0266096.

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2022Hawkes process modeling of COVID-19 with mobility leading indicators and spatial covariates. (2022). Mohler, George ; Liu, Xueying ; Chiang, Wen-Hao. In: International Journal of Forecasting. RePEc:eee:intfor:v:38:y:2022:i:2:p:505-520.

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2022Region-specific denoising identifies spatial co-expression patterns and intra-tissue heterogeneity in spatially resolved transcriptomics data. (2022). Liu, Zhandong ; Wang, Linhua ; Maletic-Savatic, Mirjana. In: Nature Communications. RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-34567-0.

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2022The effect of human vaccination behaviour on strain competition in an infectious disease: An imitation dynamic approach. (2022). Bhattacharyya, Samit ; Deka, Aniruddha. In: Theoretical Population Biology. RePEc:eee:thpobi:v:143:y:2022:i:c:p:62-76.

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2022Joint modeling of effects of customer tier program on customer purchase duration and purchase amount. (2022). Hoshino, Takahiro ; Nishio, Kazuki. In: Journal of Retailing and Consumer Services. RePEc:eee:joreco:v:66:y:2022:i:c:s0969698921004720.

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2022KSTAR: An algorithm to predict patient-specific kinase activities from phosphoproteomic data. (2022). Naegle, Kristen M ; Ma, Cynthia X ; Ahmed, Hamza ; Jordan, Ben T ; Crowl, Sam. In: Nature Communications. RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-32017-5.

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2022Impact of Digital Inequality on the COVID-19 Pandemic: Evidence from European Union Countries. (2022). Kowalczyk-Rolczyska, Patrycja ; Grishchenko, Natalia ; Borda, Marta. In: Sustainability. RePEc:gam:jsusta:v:14:y:2022:i:5:p:2850-:d:761594.

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2022Impact of resource-based conditional interaction on cooperation in spatial social dilemmas. (2022). Shi, Yong ; Li, Hui-Jia ; Xia, Chengyi ; Wang, Juan ; Yang, Wenjun ; Han, Weiwei. In: Physica A: Statistical Mechanics and its Applications. RePEc:eee:phsmap:v:594:y:2022:i:c:s0378437122001133.

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2022SIMILE enables alignment of tandem mass spectra with statistical significance. (2022). Louie, Katherine B ; Xing, Shipei ; Wang, Mingxun ; Daniel, ; Bowen, Benjamin P ; Northen, Trent R ; Dorrestein, Pieter C ; Huan, Tao. In: Nature Communications. RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-30118-9.

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2022Metabolite annotation from knowns to unknowns through knowledge-guided multi-layer metabolic networking. (2022). Zhou, Zhiwei ; Luo, Mingdu ; Zhu, Zheng-Jiang ; Zhang, Haosong ; Yin, Yandong ; Cai, Yuping. In: Nature Communications. RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-34537-6.

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2022Sourcing thermotolerant poly(ethylene terephthalate) hydrolase scaffolds from natural diversity. (2022). Beckham, Gregg T ; Kim, Dong-Jin ; Pickford, Andrew R ; Graham, Rosie ; Dubois, Jennifer L ; Gill, Raj ; Payne, Christina M ; Cox, Paul A ; Boyd, Eric S ; Brizendine, Richard K ; Zahn, Michael ; Bratti, Felicia ; Shakespeare, Thomas J ; Avilan, Luisana ; Ramirez, Kelsey J ; Gado, Japheth E ; Poudel, Saroj ; Erickson, Erika ; Michener, William E ; McGeehan, John E ; Konig, Gerhard. In: Nature Communications. RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-35237-x.

Full description at Econpapers || Download Modeling tissue-specific breakpoint proximity of structural variations from whole-genomes to identify cancer drivers. (2022). Dixon, Austin ; Khurana, Ekta ; Martinez-Fundichely, Alexander. In: Nature Communications. RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-32945-2.

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2022SIMLR: Machine Learning inside the SIR Model for COVID-19 Forecasting. (2022). Greiner, Russell ; Flores, Leonardo ; Vega, Roberto. In: Forecasting. RePEc:gam:jforec:v:4:y:2022:i:1:p:5-94:d:723710.

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2022Evolution of trust in a hierarchical population with punishing investors. (2022). Szolnoki, Attila ; Chen, Xiaojie ; Liu, Yang ; Sun, Ketian. In: Chaos, Solitons & Fractals. RePEc:eee:chsofr:v:162:y:2022:i:c:s0960077922006233.

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2022Spontaneous emergence of groups and signaling diversity in dynamic networks. (2022). Riedl, Christoph ; Smead, Rory ; Forber, Patrick ; Fulker, Zachary. In: Papers. RePEc:arx:papers:2210.17309.

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2022Convolutional neural networks in estimating the spatial distribution of electric vehicles to support electricity grid planning. (2022). Honkapuro, Samuli ; Raisanen, Otto ; Haapaniemi, Jouni ; Tikka, Ville. In: Applied Energy. RePEc:eee:appene:v:328:y:2022:i:c:s0306261922013812.

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2022Prioritizing Choices in the Conservation of Flora and Fauna: Research Trends and Methodological Approaches. (2022). Hernandez, Jonathan O ; Park, Byung Bae ; Buot, Inocencio E. In: Land. RePEc:gam:jlands:v:11:y:2022:i:10:p:1645-:d:923501.

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2022Value-directed information search in partner choice. (2022). He, Lisheng ; Ma, Jiaxin ; Wang, Hongyi. In: Judgment and Decision Making. RePEc:jdm:journl:v:17:y:2022:i:6:p:1287-1312.

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2022Homeostatic criticality in neuronal networks. (2022). Kinouchi, Osame ; Girardi-Schappo, Mauricio ; Marin, Boris ; Menesse, Gustavo. In: Chaos, Solitons & Fractals. RePEc:eee:chsofr:v:156:y:2022:i:c:s0960077922000881.

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2022STREAMING-tag system reveals spatiotemporal relationships between transcriptional regulatory factors and transcriptional activity. (2022). Pertsinidis, Alexandros ; Ohkawa, Yasuyuki ; Owada, Hitoshi ; Shintani, Manabu ; Sato, Yuko ; Li, Jieru ; Uchino, Satoshi ; Shimada, Seiru ; Ochiai, Hiroshi ; Ohishi, Hiroaki ; Kimura, Hiroshi ; Yamamoto, Takashi. In: Nature Communications. RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-35286-2.

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2022Brain-wide reconstruction of inhibitory circuits after traumatic brain injury. (2022). Lyon, David C ; Cao, Quincy ; Pavani, Shreya ; Tierno, Alexa ; Frankowski, Jan C ; Hunt, Robert F. In: Nature Communications. RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-31072-2.

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2022Priors in Bayesian Deep Learning: A Review. (2022). Fortuin, Vincent. In: International Statistical Review. RePEc:bla:istatr:v:90:y:2022:i:3:p:563-591.

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2022Kinetics of mRNA nuclear export regulate innate immune response gene expression. (2022). Hoffmann, Alexander ; Jiang, Kevin ; Sen, Supriya ; Lefaudeux, Diane. In: Nature Communications. RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-34635-5.

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2022Designing the Microbes and Social Equity Symposium: A Novel Interdisciplinary Virtual Research Conference Based on Achieving Group-Directed Outputs. (2022). Hodges, Leslie ; Wolf, Patricia G ; Kramer, Michael R ; Johnson, Abigail J ; Wissel, Emily F ; Daniel, Gaea A ; Wertheim, Frank S ; Ishaq, Suzanne L ; Trujillo, Monica ; Pearson, Amber L ; Tussing-Humphreys, Lisa Marie ; Darling, Katherine Weatherford ; Kozik, Ariangela J ; Machuca, Jessica Otero ; Myers, Elise Mckenna ; Lichtenwalner, Anne ; MacRae, Jean D ; Friedman, Michael ; Hosler, Sarah ; Kozyrskyj, Anita L ; Mhuireach, Gwynne ; Balkan, Joe ; Nielsen, Charlene C ; Eggleston, Erin M ; Arshad, Myra ; Young, Sabrina K ; Grieneisen, Laura ; Donovan, Sharon M. In: Challenges. RePEc:gam:jchals:v:13:y:2022:i:2:p:30-:d:861338
2022A hierarchy of biomolecular proportional-integral-derivative feedback controllers for robust perfect adaptation and dynamic performance. (2022). Khammash, Mustafa ; Kumar, Sant ; Filo, Maurice. In: Nature Communications. RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-29640-7.

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2022Community voices: sowing, germinating, flourishing as strategies to support inclusion in STEM. (2022). Santos, Suzana Dos ; Cassia-Silva, Cibele ; Jesus, Priscila Barreto ; Bacon, Christine D ; Souza, Lucy ; Hormanseder, Beatriz ; Amati-Martins, Iris ; Dias-Silva, Fernanda ; Hohlenwerger, Camila ; Almeida, Thamara Santos ; Santana, Pamela Cristina ; Hipolito, Juliana ; Diele-Viegas, Luisa Maria ; Reis, Alice ; Gasparetto, Luiza Flores ; Queiroz-Souza, Caren ; Sampaio, Ana Clara ; Pilecco, Flavia B ; Pires, Giuliana Caldeira ; Pavone, Carla Brunner ; Ferreira, Tabata Elise ; Murer, Beatriz Moraes ; Fenker, Jessica ; Virginio, Flavia ; Pareja-Mejia, Daniela ; Collevatti, Rosane G ; Viaggi, Jemilli. In: Nature Communications. RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41
2022Programmable self-regulated molecular buffers for precise sustained drug delivery. (2022). Derbali, Rabeb Mouna ; Hassine, Sami ; Long, Valerie ; Lauzon, Dominic ; de Guire, Vincent ; Fiset, Celine ; Vallee-Belisle, Alexis ; Berdugo, Jeremie ; Desrosiers, Arnaud ; Desgroseillers, Luc ; Chain, Jeanne Leblond. In: Nature Communications. RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-33491-7.

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2022Combined IgE neutralization and Bifidobacterium longum supplementation reduces the allergic response in models of food allergy. (2022). Kim, Jisoo ; Ryu, Min Sook ; Park, Hae-Sim ; Jang, Gyeonghui ; Chang, Yoon-Seok ; Lee, Sang Hee ; Hong, Chun-Pyo ; Jin, Hyun-Tak ; Moon, Ji-Yeong ; Oh, Sung-Man ; Lim, Hye Seong ; Yang, Bo-Gie ; Song, Yoo-Jeong ; Kwak, Min-Jung ; Hyun, Hye-Won ; Sung, Young Chul. In: Nature Communications. RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-33176-1.

Full description at Econpapers || Download Genome-centric analysis of short and long read metagenomes reveals uncharacterized microbiome diversity in Southeast Asians. (2022). Ravikrishnan, Aarthi ; Low, Adrian ; Ding, Yichen ; Qi, Amanda Hui ; Lin, Linda Wei ; Teo, Yik-Ying ; Seedorf, Henning ; Nagarajan, Niranjan ; Gounot, Jean-Sebastien ; Chia, Minghao ; Bertrand, Denis ; Saw, Woei-Yuh. In: Nature Communications. RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-33782-z.

Full description at Econpapers || Download Ancient oral microbiomes support gradual Neolithic dietary shifts towards agriculture. (2022). Caramelli, David ; Ronchitelli, Annamaria ; Mariotti, Valentina ; Barbaro, Cecilia Conati ; Belcastro, Maria Giovanna ; Zaro, Valentina ; Lognoli, Miriam ; Innocenti, Gabriel ; Ricci, Stefano ; Modi, Alessandra ; Bondioli, Luca ; Quagliariello, Andrea ; Lari, Martina ; Sperduti, Alessandra ; Muntoni, Italo Maria ; Radina, Francesca ; Martino, Maria Elena ; Dellu, Elena ; Cristiani, Emanuela ; Cavazzuti, Claudio ; Lippi, Marta Mariotti ; Boschin, Francesco. In: Nature Communications. RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-34416-0.

Full description atImpact of international travel and diarrhea on gut microbiome and resistome dynamics. (2022). Patel, Sanket ; Schwartz, Drew J ; Cabada, Miguel M ; Tilley, Drake H ; Dantas, Gautam ; Blake, Kevin S ; Simons, Mark P ; Boolchandani, Manish ; Porter, Chad K ; Isidean, Sandra D ; Soto, Giselle ; Meza, Rina ; Morales, Maria Luisa. In: Nature Communications. RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-34862-w.

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2022Origins of direction selectivity in the primate retina. (2022). Wu, Jiajia ; Dacey, Dennis M ; Joo, Hannah R ; Detwiler, Peter B ; Crook, Joanna D ; Packer, Orin S ; Peterson, Beth B ; Smith, Robert G ; Kim, Yeon Jin ; Troy, John B ; Viana, Felix ; Yau, King-Wai ; Gamlin, Paul D ; Robinson, Farrel R ; Puller, Christian. In: Nature Communications. RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-30405-5.

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Recent citations received in 2022

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2022Spatial dynamics of a fractional predator-prey system with time delay and Allee effect. (2022). Ouyang, Miao ; Liu, Shutang ; Bi, Zhimin. In: Chaos, Solitons & Fractals. RePEc:eee:chsofr:v:162:y:2022:i:c:s0960077922006440.

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2022Tracking changes in SARS-CoV-2 transmission with a novel outpatient sentinel surveillance system in Chicago, USA. (2022). Pacilli, Massimo ; Ghinai, Isaac ; Cobey, Sarah ; Lightner, Shannon ; Gerardin, Jaline ; Holden, Tobias M ; Arevalo, Philip ; Jorgensen, Emile ; Richardson, Reese ; Gostic, Katelyn M. In: Nature Communications. RePEc:nat:natcom:v:13:y:2022:i:1:d:10.1038_s41467-022-33317-6.

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Recent citations received in 2021

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2021A spline-based time-varying reproduction number for modelling epidemiological outbreaks. (2021). Pircalabelu, Eugen. In: LIDAM Discussion Papers ISBA. RePEc:aiz:louvad:2021030.

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2021Modeling and forecasting the COVID?19 pandemic time?series data. (2021). Hendry, David ; Castle, Jennifer ; Doornik, Jurgen A. In: Social Science Quarterly. RePEc:bla:socsci:v:102:y:2021:i:5:p:2070-2087.

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2021Media discourses about a superspreader destination: How mismanagement of Covid-19 triggers debates about sustainability and geopolitics. (2021). Peters, Mike ; Pikkemaat, Birgit ; Bichler, Bernhard Fabian ; Mayer, Marius. In: Annals of Tourism Research. RePEc:eee:anture:v:91:y:2021:i:c:s0160738321001560.

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2021Quantifying previous SARS-CoV-2 infection through mixture modelling of antibody levels. (2021). Agweyu, A ; Bottomley, C ; I. M. O. Adetifa, ; Nyagwange, J ; Karanja, H ; Gitonga, J ; Mugo, D ; Etyang, A O ; Kagucia, E W ; J. A. G. Scott, ; Gallagher, K ; Warimwe, G M ; Uyoga, S ; Nokes, D J ; Otiende, M. In: Nature Communications. RePEc:nat:natcom:v:12:y:2021:i:1:d:10.1038_s41467-021-26452-z.

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2021The generative capacity of probabilistic protein sequence models. (2021). McGee, Francisco ; Haldane, Allan ; Carnevale, Vincenzo ; Levy, Ronald M ; Vucetic, Slobodan ; Novinger, Quentin ; Hauri, Sandro. In: Nature Communications. RePEc:nat:natcom:v:12:y:2021:i:1:d:10.1038_s41467-021-26529-9.

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2021scCODA is a Bayesian model for compositional single-cell data analysis. (2021). Schubert, B ; Theis, F J ; Muller, C L ; Ostner, J ; Buttner, M. In: Nature Communications. RePEc:nat:natcom:v:12:y:2021:i:1:d:10.1038_s41467-021-27150-6.

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2021Perceptions of risk for COVID-19 among individuals with chronic diseases and stakeholders in Central Appalachia. (2021). Awasthi, Manul ; Stewart, David W ; Dowling-McClay, Karilynn ; Weierbach, Florence M ; Mamudu, Hadii M ; Ahuja, Manik ; Paul, Timir K. In: Palgrave Communications. RePEc:pal:palcom:v:8:y:2021:i:1:d:10.1057_s41599-021-00906-7.

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2021Cluster size distribution of cells disseminating from a primary tumor. (2021). Levine, Herbert ; Mukherjee, Mrinmoy. In: PLOS Computational Biology. RePEc:plo:pcbi00:1009011.

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2021Novelty is not surprise: Human exploratory and adaptive behavior in sequential decision-making. (2021). Herzog, Michael H ; Gerstner, Wulfram ; Lehmann, Marco P ; Modirshanechi, Alireza ; Xu, He A. In: PLOS Computational Biology. RePEc:plo:pcbi00:1009070.

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2021Phenotypic-dependent variability and the emergence of tolerance in bacterial populations. (2021). Muoz, Miguel A ; Sireci, Matteo ; Mateu, Jose Camacho. In: PLOS Computational Biology. RePEc:plo:pcbi00:1009417.

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2021The role of competition versus cooperation in microbial community coalescence. (2021). Pawar, Samraat ; Smith, Thomas P ; Cook, Jacob ; Clegg, Tom ; Lechon-Alonso, Pablo. In: PLOS Computational Biology. RePEc:plo:pcbi00:1009584.

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2021Strategie di governo e strutture egemoniche in tempo di pandemia. (2021). Bellanca, Nicolo', . In: MPRA Paper. RePEc:pra:mprapa:111234.

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Recent citations received in 2020

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2020Socioeconomic Network Heterogeneity and Pandemic Policy Response. (2020). Cook, Cody ; Akbarpour, Mohammad ; Yang, Hanbin ; Vasserman, Shoshana ; Tebaldi, Pietro ; Saccarola, Matteo ; Nagaraj, Abhishek ; Mongey, Simon ; Marzuoli, Aude. In: Working Papers. RePEc:bfi:wpaper:2020-75.

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2020Disentangling the biotic and abiotic drivers of emergent migratory behavior using individual-based models. (2020). Fiechter, Jerome ; Bograd, Steven J ; Abrahms, Briana ; Dodson, Stephanie ; Hazen, Elliott L. In: Ecological Modelling. RePEc:eee:ecomod:v:432:y:2020:i:c:s0304380020302957.

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2020Socioeconomic Network Heterogeneity and Pandemic Policy Response. (2020). Vasserman, Shoshana ; Tebaldi, Pietro ; Mongey, Simon ; Marzuoli, Aude ; Cook, Cody ; Akbarpour, Mohammad ; Yang, Hanbin ; Saccarola, Matteo ; Nagaraj, Abhishek. In: NBER Working Papers. RePEc:nbr:nberwo:27374.

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2020Limits on amplifiers of natural selection under death-Birth updating. (2020). Nowak, Martin A ; Chatterjee, Krishnendu ; Pavlogiannis, Andreas ; Tkadlec, Josef. In: PLOS Computational Biology. RePEc:plo:pcbi00:1007494.

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2020Transient amplifiers of selection and reducers of fixation for death-Birth updating on graphs. (2020). Lippner, Gabor ; Parke, Darren ; Kolodny, Joshua ; Brizuela, Lori ; Steinhagen, Patricia ; Withers, James ; Jencks, Robert ; Sample, Christine ; Allen, Benjamin ; Dementieva, Yulia A. In: PLOS Computational Biology. RePEc:plo:pcbi00:1007529.

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2020Time varying methods to infer extremes in dengue transmission dynamics. (2020). Cook, Alex R ; Ng, Lee Ching ; Lee, Borame Sue ; Han, Yi Ting ; Lim, Jue Tao. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008279.

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2020The Moran process on 2-chromatic graphs. (2020). Nowak, Martin A ; Chatterjee, Krishnendu ; McAvoy, Alex ; Kaveh, Kamran. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008402.

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2020Ten simple rules for starting research in your late teens. (2020). Bourne, Philip E ; Chalupa, Jack ; Newbury, Abigail M ; Mura, Cameron. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008403.

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2020Modeling habitat connectivity in support of multiobjective species movement: An application to amphibian habitat systems. (2020). Trauth, Kathleen M ; Gholamialam, Ashkan ; Matisziw, Timothy C. In: PLOS Computational Biology. RePEc:plo:pcbi00:1008540.

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2020Impact of sars-cov-2 interventions on dengue transmission. (2020). Cook, Alex R ; Ng, Lee Ching ; Aik, Joel ; Koo, Joel Ruihan ; Li, Esther ; Xiong, Lawrence Zheng ; Lee, Borame Sue ; Lim, Jue Tao. In: PLOS Neglected Tropical Diseases. RePEc:plo:pntd00:0008719.

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2020Two-step multi-omics modelling of drug sensitivity in cancer cell lines to identify driving mechanisms. (2020). Schuppert, Andreas ; Kusch, Nina. In: PLOS ONE. RePEc:plo:pone00:0238961.

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2020Directionally dependent multi-view clustering using copula model. (2020). Mallick, Bani K ; Lee, Se Yoon ; Souris, Allyson ; Karimi, Mostafa ; Iquebal, Ashif S ; Afrin, Kahkashan. In: PLOS ONE. RePEc:plo:pone00:0238996.

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2020Societal and economic factors associated with COVID-19 indicate that developing countries could suffer the most. (2020). Foster, Kathleen Lois ; Selvitella, Alessandro Maria. In: Technium Social Sciences Journal. RePEc:tec:journl:v:10:y:2020:i:1:p:637-644.

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Recent citations received in 2019

YearCiting document
2019Optimal Layout of Static Guidance Information in Comprehensive Transportation Hubs Based on Passenger Pathfinding Behavior. (2019). Sun, Lijun ; Xie, Congcong ; Shao, Minhua ; Jiang, Lijuan. In: Sustainability. RePEc:gam:jsusta:v:11:y:2019:i:13:p:3684-:d:245761.

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2019Even a good influenza forecasting model can benefit from internet-based nowcasts, but those benefits are limited. (2019). Priedhorsky, Reid ; Daughton, Ashlynn R ; Osthus, Dave. In: PLOS Computational Biology. RePEc:plo:pcbi00:1006599.

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2019Human online adaptation to changes in prior probability. (2019). Landy, Michael S ; Ji, Wei ; Acerbi, Luigi ; Norton, Elyse H. In: PLOS Computational Biology. RePEc:plo:pcbi00:1006681.

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2019Invariant neural responses for sensory categories revealed by the time-varying information for communication calls. (2019). Theunissen, Frederic E ; Elie, Julie E. In: PLOS Computational Biology. RePEc:plo:pcbi00:1006698.

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2019Noise-precision tradeoff in predicting combinations of mutations and drugs. (2019). Alon, Uri ; Mayo, Avi ; Zimmer, Anat ; Tendler, Avichai. In: PLOS Computational Biology. RePEc:plo:pcbi00:1006956.

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2019Reappraising the utility of Google Flu Trends. (2019). Shaman, Jeffrey ; Kandula, Sasikiran. In: PLOS Computational Biology. RePEc:plo:pcbi00:1007258.

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2019Learning the structure of the world: The adaptive nature of state-space and action representations in multi-stage decision-making. (2019). Balleine, Bernard W ; Dezfouli, Amir. In: PLOS Computational Biology. RePEc:plo:pcbi00:1007334.

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